Variant report

Variant	rs1382266
Chromosome Location	chr12:10402490-10402491
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10845092	1.00[AMR][1000 genomes]
rs1564185	1.00[AMR][1000 genomes]
rs2169747	1.00[AMR][1000 genomes]
rs2255542	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537784	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537785	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537786	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537787	0.83[AFR][1000 genomes]
rs2537788	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537794	1.00[AMR][1000 genomes]
rs2537796	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537797	1.00[AMR][1000 genomes]
rs2537799	0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537803	0.82[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617126	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617129	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617131	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617138	1.00[AMR][1000 genomes]
rs2617139	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617140	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617143	0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2908451	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2927557	0.83[AFR][1000 genomes]
rs3912116	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4764378	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7135451	0.86[YRI][hapmap];1.00[AMR][1000 genomes]
rs7954334	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7960005	1.00[AMR][1000 genomes]
rs7961145	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7966586	1.00[AMR][1000 genomes]
rs7972553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1054811	chr12:10350587-10440005	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10377800-10404400	Weak transcription	Left Ventricle	heart
2	chr12:10397200-10403000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr12:10398800-10436200	Weak transcription	Placenta	Placenta
4	chr12:10399400-10405200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:10401600-10403800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr12:10401800-10402800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr12:10402000-10403200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr12:10402200-10403000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr12:10402400-10402600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:10402400-10402800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:10402400-10402800	Enhancers	Primary T cells from cord blood	blood
12	chr12:10402400-10402800	Enhancers	GM12878-XiMat	blood
13	chr12:10402400-10403000	Enhancers	Primary hematopoietic stem cells	blood
14	chr12:10402400-10403200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr12:10402400-10403200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr12:10402400-10403200	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links