Variant report

Variant	rs3912116
Chromosome Location	chr12:10446845-10446846
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10445022..10447315-chr12:10448355..10450390,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10845092	1.00[AMR][1000 genomes]
rs1382266	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1564185	0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2169747	1.00[AMR][1000 genomes]
rs2255542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537785	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537786	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537787	1.00[AFR][1000 genomes]
rs2537788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537794	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537796	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537797	0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537799	0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2537803	0.91[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617126	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617131	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617138	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617139	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617140	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2617143	0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2908451	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2927557	1.00[AFR][1000 genomes]
rs4764378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7135451	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs7297895	0.83[AFR][1000 genomes]
rs7299590	0.86[AFR][1000 genomes]
rs7308601	0.83[AFR][1000 genomes]
rs7954334	1.00[AMR][1000 genomes]
rs7960005	1.00[AMR][1000 genomes]
rs7961145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7966586	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7972553	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10445200-10447000	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr12:10445200-10447000	Enhancers	GM12878-XiMat	blood
3	chr12:10445200-10447200	Enhancers	Fetal Thymus	thymus
4	chr12:10445200-10447600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr12:10445400-10447000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr12:10445400-10447800	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr12:10445800-10447400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:10446000-10447000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr12:10446000-10447000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr12:10446000-10447400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr12:10446600-10447800	Enhancers	Primary T cells from cord blood	blood
12	chr12:10446800-10447400	Enhancers	Primary T cells fromperipheralblood	blood

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