Variant report

Variant	rs12582132
Chromosome Location	chr12:105408341-105408342
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11834087	1.00[JPT][hapmap]
rs12579120	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12579129	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12579202	1.00[JPT][hapmap]
rs12579441	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12579469	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12579790	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12580237	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12580271	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12580282	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12580384	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12582090	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12582312	1.00[JPT][hapmap]
rs17036429	1.00[JPT][hapmap]
rs17036433	1.00[JPT][hapmap]
rs17036489	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs17036545	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17036606	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35938519	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4369494	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4545639	1.00[JPT][hapmap]
rs61060789	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7135496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73383478	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73383483	1.00[EUR][1000 genomes]
rs73383487	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73383495	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73383498	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73387230	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
3	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105381800-105411400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr12:105385800-105408400	Weak transcription	Fetal Heart	heart
3	chr12:105387600-105412200	Weak transcription	HepG2	liver
4	chr12:105389000-105430600	Weak transcription	Hela-S3	cervix
5	chr12:105389400-105411200	Weak transcription	Osteobl	bone
6	chr12:105393200-105411400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr12:105393200-105418200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr12:105393400-105421200	Weak transcription	NHLF	lung
9	chr12:105393600-105412000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:105393800-105412000	Weak transcription	Lung	lung
11	chr12:105393800-105412200	Weak transcription	Placenta	Placenta
12	chr12:105393800-105412800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr12:105393800-105414400	Weak transcription	Esophagus	oesophagus
14	chr12:105393800-105414600	Weak transcription	Colonic Mucosa	Colon
15	chr12:105393800-105417400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr12:105394000-105414000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr12:105394000-105418000	Weak transcription	Colon Smooth Muscle	Colon
18	chr12:105394200-105422800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr12:105394200-105435000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr12:105394400-105412000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr12:105394800-105434200	Weak transcription	Brain Substantia Nigra	brain
22	chr12:105395200-105414400	Weak transcription	Fetal Kidney	kidney
23	chr12:105397400-105419400	Weak transcription	Fetal Brain Male	brain
24	chr12:105397400-105443200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr12:105397800-105408800	Weak transcription	K562	blood
26	chr12:105397800-105412400	Weak transcription	Psoas Muscle	Psoas
27	chr12:105398000-105412000	Weak transcription	NHEK	skin
28	chr12:105399000-105414200	Weak transcription	Small Intestine	intestine
29	chr12:105399200-105414200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr12:105399400-105412400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:105400000-105411800	Weak transcription	Aorta	Aorta
32	chr12:105400600-105409000	Weak transcription	Ovary	ovary
33	chr12:105400600-105411800	Weak transcription	HMEC	breast
34	chr12:105401400-105408800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr12:105401400-105409600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr12:105401400-105415200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr12:105401800-105412000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr12:105402000-105408600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr12:105404000-105410000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr12:105405200-105409200	Strong transcription	Primary B cells from peripheral blood	blood
41	chr12:105405800-105408600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:105405800-105409200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr12:105405800-105409600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr12:105405800-105410800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr12:105405800-105411200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr12:105405800-105412400	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr12:105406000-105409400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr12:105406200-105409400	Strong transcription	Primary T cells from cord blood	blood
49	chr12:105406200-105409600	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr12:105406200-105413200	Strong transcription	Duodenum Mucosa	Duodenum

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