Variant report

Variant	rs12582351
Chromosome Location	chr12:10219885-10219886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10505751	0.84[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053569	0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17205644	0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs4764227	1.00[ASN][1000 genomes]
rs61918591	0.83[EUR][1000 genomes]
rs61918593	0.83[EUR][1000 genomes]
rs61918595	0.92[ASN][1000 genomes]
rs7136826	0.84[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs874463	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524870	chr12:10209711-10219885	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12582351	TAS2R43	cis	cerebellum	SCAN
rs12582351	POU5F1P3	cis	parietal	SCAN
rs12582351	ACRBP	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10217200-10220400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:10217400-10220000	Enhancers	HUVEC	blood vessel
3	chr12:10217400-10220000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr12:10218000-10222000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:10218200-10220000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:10218200-10220600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:10218200-10221000	Weak transcription	Adipose Nuclei	Adipose
8	chr12:10218600-10220000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr12:10219000-10220200	Enhancers	Primary hematopoietic stem cells	blood
10	chr12:10219000-10220200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr12:10219000-10222600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:10219000-10236800	Weak transcription	Left Ventricle	heart
13	chr12:10219200-10221600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr12:10219600-10220200	Enhancers	Colon Smooth Muscle	Colon
15	chr12:10219600-10221000	Enhancers	Primary B cells from cord blood	blood
16	chr12:10219600-10221600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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