Variant report

Variant	rs7136826
Chromosome Location	chr12:10222356-10222357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9963713..9966289-chr12:10221861..10224051,2	K562	blood:
2	chr12:10221146..10223994-chr12:10224373..10226015,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10505751	0.95[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.86[ASN][1000 genomes]
rs11053569	0.90[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs12582351	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4764227	0.94[ASN][1000 genomes]
rs61918595	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs874463	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7136826	CLSTN3	cis	parietal	SCAN
rs7136826	POU5F1P3	cis	parietal	SCAN
rs7136826	TAS2R43	cis	cerebellum	SCAN
rs7136826	RIMKLB	cis	cerebellum	SCAN
rs7136826	PTPN6	cis	cerebellum	SCAN
rs7136826	ACRBP	cis	parietal	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10219000-10222600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:10219000-10236800	Weak transcription	Left Ventricle	heart
3	chr12:10220000-10223000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr12:10220600-10222800	Enhancers	Primary B cells from peripheral blood	blood
5	chr12:10220800-10234800	Weak transcription	Placenta	Placenta
6	chr12:10221200-10222400	Enhancers	Hela-S3	cervix
7	chr12:10221200-10222600	Enhancers	Colon Smooth Muscle	Colon
8	chr12:10221200-10223400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr12:10221400-10222400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:10221400-10222800	Enhancers	HUVEC	blood vessel
11	chr12:10221400-10235000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr12:10222000-10223000	Enhancers	Primary hematopoietic stem cells	blood
13	chr12:10222000-10223400	Enhancers	Primary B cells from cord blood	blood
14	chr12:10222000-10223600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr12:10222000-10224200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:10222000-10224200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:10222000-10225400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr12:10222000-10234800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr12:10222200-10222400	Enhancers	Adipose Nuclei	Adipose
20	chr12:10222200-10222600	Enhancers	Primary neutrophils fromperipheralblood	blood

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