Variant report

Variant	rs874463
Chromosome Location	chr12:10218711-10218712
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10505751	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11053569	0.86[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12582351	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17205644	0.83[EUR][1000 genomes]
rs4764227	0.96[ASN][1000 genomes]
rs61918591	0.83[EUR][1000 genomes]
rs61918593	0.83[EUR][1000 genomes]
rs61918595	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7136826	0.81[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524870	chr12:10209711-10219885	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10217200-10220400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:10217400-10220000	Enhancers	HUVEC	blood vessel
3	chr12:10217400-10220000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr12:10218000-10222000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:10218200-10219200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr12:10218200-10220000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr12:10218200-10220600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:10218200-10221000	Weak transcription	Adipose Nuclei	Adipose
9	chr12:10218400-10219000	Genic enhancers	Primary hematopoietic stem cells	blood
10	chr12:10218400-10219000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr12:10218600-10220000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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