Variant report

Variant	rs12585836
Chromosome Location	chr13:50414027-50414028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50413544..50414044-chr7:6098502..6099150,2	Hela-S3	cervix:
2	chr13:50411069..50412903-chr13:50413412..50414955,2	K562	blood:
3	chr13:50409551..50411407-chr13:50413409..50415951,2	MCF-7	breast:
4	chr13:50413564..50415064-chr7:6098251..6100141,2	K562	blood:
5	chr13:50411667..50415006-chr13:50418421..50422258,4	K562	blood:

Variant related genes	Relation type
ENSG00000086232	Chromatin interaction

rs_ID	r²[population]
rs12585921	0.87[EUR][1000 genomes]
rs1885723	0.87[EUR][1000 genomes]
rs1986085	0.87[EUR][1000 genomes]
rs2407875	0.92[EUR][1000 genomes]
rs3742094	0.87[EUR][1000 genomes]
rs3903770	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4941656	0.87[EUR][1000 genomes]
rs4942865	0.87[EUR][1000 genomes]
rs58124341	0.87[EUR][1000 genomes]
rs59823147	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7321391	0.87[EUR][1000 genomes]
rs7335016	0.87[EUR][1000 genomes]
rs73485710	0.87[EUR][1000 genomes]
rs765291	0.84[EUR][1000 genomes]
rs765292	0.87[EUR][1000 genomes]
rs7989633	0.87[EUR][1000 genomes]
rs9596194	0.87[EUR][1000 genomes]

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50396000-50414400	Weak transcription	Right Atrium	heart
2	chr13:50405800-50414200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr13:50410600-50415000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:50411200-50414400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:50411200-50414600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:50411400-50414200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr13:50411400-50414400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr13:50411400-50414600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:50411400-50422000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:50411600-50414600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:50411800-50414200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:50412200-50415200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr13:50412600-50415400	Enhancers	HepG2	liver
14	chr13:50412800-50415000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr13:50413000-50414200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr13:50413000-50414400	Weak transcription	NH-A	brain
17	chr13:50413000-50415200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr13:50413000-50421600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr13:50413200-50414200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr13:50413200-50414400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr13:50413200-50416000	Weak transcription	Osteobl	bone
22	chr13:50413400-50414400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:50413400-50414600	Weak transcription	Fetal Intestine Large	intestine
24	chr13:50413400-50414800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr13:50413400-50418600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr13:50413600-50414400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr13:50413600-50414600	Weak transcription	Fetal Intestine Small	intestine
28	chr13:50413600-50414800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr13:50413800-50414400	Weak transcription	K562	blood

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