Variant report

Variant	rs3903770
Chromosome Location	chr13:50394478-50394479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50365656..50368255-chr13:50394184..50396583,2	K562	blood:
2	chr13:50365656..50370137-chr13:50393100..50397316,5	K562	blood:
3	chr13:50393684..50395884-chr13:50422220..50424926,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1043729	1.00[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs12585836	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12585921	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12585929	1.00[CEU][hapmap]
rs13313256	0.80[EUR][1000 genomes]
rs17073322	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17073347	0.80[EUR][1000 genomes]
rs17073356	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs1819191	1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs1885723	0.88[EUR][1000 genomes]
rs1986085	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1998363	0.80[EUR][1000 genomes]
rs2181184	0.80[EUR][1000 genomes]
rs2236326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs2407875	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736830	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs3742094	0.88[EUR][1000 genomes]
rs3782929	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs3990324	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4941655	0.80[EUR][1000 genomes]
rs4941656	1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs4942862	0.80[EUR][1000 genomes]
rs4942865	1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs57118905	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs57794226	0.80[EUR][1000 genomes]
rs58124341	0.88[EUR][1000 genomes]
rs59823147	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60019803	0.80[EUR][1000 genomes]
rs60856213	0.80[EUR][1000 genomes]
rs7321391	1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes]
rs7326885	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7334018	1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs7335016	0.88[EUR][1000 genomes]
rs7335310	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs73485710	0.88[EUR][1000 genomes]
rs765291	0.84[EUR][1000 genomes]
rs765292	0.88[EUR][1000 genomes]
rs7984711	0.80[EUR][1000 genomes]
rs7989633	0.88[EUR][1000 genomes]
rs7993631	0.80[EUR][1000 genomes]
rs7993860	0.80[EUR][1000 genomes]
rs7994062	0.80[EUR][1000 genomes]
rs9591294	0.80[EUR][1000 genomes]
rs9591296	0.80[EUR][1000 genomes]
rs9596172	0.80[EUR][1000 genomes]
rs9596173	0.80[EUR][1000 genomes]
rs9596174	1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs9596175	1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs9596176	0.80[EUR][1000 genomes]
rs9596188	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs9596189	0.80[EUR][1000 genomes]
rs9596194	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv5446	chr13:50394436-50394619	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50387400-50394600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:50387400-50394800	Weak transcription	Fetal Intestine Large	intestine
3	chr13:50390000-50394800	Weak transcription	Placenta	Placenta
4	chr13:50393200-50394800	Weak transcription	Fetal Heart	heart
5	chr13:50394000-50396000	Enhancers	HepG2	liver
6	chr13:50394000-50403800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr13:50394400-50395800	Enhancers	Fetal Intestine Small	intestine

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