Variant report

Variant	rs12585921
Chromosome Location	chr13:50379094-50379095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50365533..50367919-chr13:50378840..50381173,2	K562	blood:

Variant related genes	Relation type
ENSG00000102753	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1043729	0.84[EUR][1000 genomes]
rs12585836	0.87[EUR][1000 genomes]
rs13313256	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17073322	0.84[EUR][1000 genomes]
rs17073347	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17073356	0.84[EUR][1000 genomes]
rs1819191	0.84[EUR][1000 genomes]
rs1885723	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1986085	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1998363	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2181184	0.84[EUR][1000 genomes]
rs2236326	0.84[EUR][1000 genomes]
rs2407875	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3742094	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3782929	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3903770	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4941655	0.84[EUR][1000 genomes]
rs4941656	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4942862	0.84[EUR][1000 genomes]
rs4942865	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56738401	0.80[EUR][1000 genomes]
rs57118905	0.84[EUR][1000 genomes]
rs57794226	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58124341	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59823147	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60019803	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60856213	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7321391	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7326885	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7334018	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7335016	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7335310	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73485710	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs765291	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs765292	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7984711	0.84[EUR][1000 genomes]
rs7989633	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7993631	0.84[EUR][1000 genomes]
rs7993860	0.84[EUR][1000 genomes]
rs7994062	0.84[EUR][1000 genomes]
rs9591294	0.84[EUR][1000 genomes]
rs9591296	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9596172	0.84[EUR][1000 genomes]
rs9596173	0.84[EUR][1000 genomes]
rs9596174	0.84[EUR][1000 genomes]
rs9596175	0.84[EUR][1000 genomes]
rs9596176	0.84[EUR][1000 genomes]
rs9596188	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9596189	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9596194	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900072	chr13:50266109-50381016	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv900073	chr13:50286218-50381016	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv900074	chr13:50317104-50381016	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50378800-50379600	Weak transcription	HepG2	liver
2	chr13:50378800-50379800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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