Variant report
| Variant | rs7326885 |
|---|---|
| Chromosome Location | chr13:50377193-50377194 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs12585921 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13313256 | 0.81[AMR][1000 genomes] |
| rs17073347 | 0.81[AMR][1000 genomes] |
| rs1885723 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs1986085 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1998363 | 0.81[AMR][1000 genomes] |
| rs2407875 | 0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3742094 | 0.81[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs3782929 | 0.81[AMR][1000 genomes] |
| rs3903770 | 0.80[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4941656 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs4942865 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs57794226 | 0.81[AMR][1000 genomes] |
| rs58124341 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs59823147 | 0.80[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs60019803 | 0.81[AMR][1000 genomes] |
| rs60856213 | 0.81[AMR][1000 genomes] |
| rs7321391 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs7334018 | 0.81[AMR][1000 genomes] |
| rs7335016 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs7335310 | 0.81[AMR][1000 genomes] |
| rs73485710 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs765291 | 0.82[AFR][1000 genomes] |
| rs765292 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs7989633 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs9591296 | 0.81[AMR][1000 genomes] |
| rs9596188 | 0.81[AMR][1000 genomes] |
| rs9596189 | 0.81[AMR][1000 genomes] |
| rs9596194 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv900072 | chr13:50266109-50381016 | Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv900073 | chr13:50286218-50381016 | Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv900074 | chr13:50317104-50381016 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:50368400-50378600 | Weak transcription | HepG2 | liver |
| 2 | chr13:50377000-50377800 | Weak transcription | Placenta | Placenta |
