Variant report

Variant	rs59823147
Chromosome Location	chr13:50377502-50377503
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12585836	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12585921	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1885723	0.84[EUR][1000 genomes]
rs1986085	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2407875	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3742094	0.84[EUR][1000 genomes]
rs3903770	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3990324	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4941656	0.84[EUR][1000 genomes]
rs4942865	0.84[EUR][1000 genomes]
rs58124341	0.84[EUR][1000 genomes]
rs7321391	0.84[EUR][1000 genomes]
rs7326885	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7335016	0.84[EUR][1000 genomes]
rs73485710	0.84[EUR][1000 genomes]
rs765291	0.81[EUR][1000 genomes]
rs765292	0.84[EUR][1000 genomes]
rs7989633	0.84[EUR][1000 genomes]
rs9596194	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900072	chr13:50266109-50381016	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv900073	chr13:50286218-50381016	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv900074	chr13:50317104-50381016	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50368400-50378600	Weak transcription	HepG2	liver
2	chr13:50377000-50377800	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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