Variant report

Variant	rs12603827
Chromosome Location	chr17:46327902-46327903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46326674..46329434-chr17:46702733..46704459,2	K562	blood:
2	chr17:46326654..46330395-chr17:46331839..46334091,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170689	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12937347	0.86[ASN][1000 genomes]
rs2123344	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2924250	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2924254	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2938470	0.97[ASN][1000 genomes]
rs4239201	0.84[ASN][1000 genomes]
rs4324172	0.88[ASN][1000 genomes]
rs4423463	0.90[ASN][1000 genomes]
rs4606751	0.84[ASN][1000 genomes]
rs4793816	0.84[ASN][1000 genomes]
rs6504160	0.89[ASN][1000 genomes]
rs6504210	0.86[ASN][1000 genomes]
rs7211099	0.88[ASN][1000 genomes]
rs7213149	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7216202	0.88[ASN][1000 genomes]
rs7218563	0.90[ASN][1000 genomes]
rs7221510	0.90[ASN][1000 genomes]
rs8072002	0.84[ASN][1000 genomes]
rs8077516	0.88[ASN][1000 genomes]
rs8077763	0.86[ASN][1000 genomes]
rs9797269	0.82[ASN][1000 genomes]
rs9898383	0.90[ASN][1000 genomes]
rs9906658	0.84[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46306600-46335400	Weak transcription	Thymus	Thymus
2	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr17:46322400-46328200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr17:46322400-46328200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr17:46322600-46328000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr17:46322600-46328200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr17:46322600-46328200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr17:46322600-46329400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr17:46322600-46341800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr17:46322600-46342200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr17:46323800-46328200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr17:46323800-46330600	Weak transcription	GM12878-XiMat	blood
15	chr17:46324200-46355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr17:46324400-46328400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr17:46324800-46328200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr17:46324800-46328200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr17:46324800-46337000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr17:46324800-46343000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr17:46325000-46328200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr17:46325000-46328200	Weak transcription	HUVEC	blood vessel
24	chr17:46325600-46328400	Weak transcription	A549	lung
25	chr17:46326000-46329400	Weak transcription	K562	blood
26	chr17:46326200-46330200	Weak transcription	Primary T cells from cord blood	blood
27	chr17:46326200-46335600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr17:46326400-46329600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr17:46326600-46328400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr17:46326600-46329600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr17:46327000-46330400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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