Variant report

Variant	rs2924254
Chromosome Location	chr17:46348384-46348385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46345603..46350515-chr17:46350981..46354335,5	K562	blood:
2	chr17:46346886..46348579-chr17:46498069..46500502,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12603827	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12937347	0.90[ASN][1000 genomes]
rs1396868	0.82[ASN][1000 genomes]
rs1509635	0.82[JPT][hapmap]
rs1553750	0.90[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs2123344	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2924250	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2938470	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4239201	0.90[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4324172	0.92[ASN][1000 genomes]
rs4423463	0.94[ASN][1000 genomes]
rs4606751	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4793816	0.88[ASN][1000 genomes]
rs6504160	0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs6504210	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7211099	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7211780	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7213149	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7216202	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7218287	0.81[ASN][1000 genomes]
rs7218563	0.94[ASN][1000 genomes]
rs7221510	0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs8072002	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs8077516	0.92[ASN][1000 genomes]
rs8077763	0.90[ASN][1000 genomes]
rs9303541	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs9797269	0.86[ASN][1000 genomes]
rs9898383	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs9906658	0.88[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:46324200-46355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:46339800-46352200	Weak transcription	Primary T cells from cord blood	blood
8	chr17:46343400-46354000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:46343400-46355800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr17:46343400-46371200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr17:46343600-46356000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr17:46343800-46352400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr17:46343800-46353800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr17:46344200-46352400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr17:46344400-46352600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr17:46344600-46356000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr17:46347000-46348800	Weak transcription	K562	blood
18	chr17:46347800-46349000	Enhancers	Psoas Muscle	Psoas
19	chr17:46347800-46349000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr17:46347800-46349000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr17:46348000-46348400	Enhancers	A549	lung
22	chr17:46348000-46349200	Enhancers	Fetal Heart	heart

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