Variant report

Variant	rs9797269
Chromosome Location	chr17:46477530-46477531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12603827	0.82[ASN][1000 genomes]
rs12937347	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1396868	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1553750	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2123344	0.84[ASN][1000 genomes]
rs2924250	0.86[ASN][1000 genomes]
rs2924254	0.86[ASN][1000 genomes]
rs2938470	0.85[ASN][1000 genomes]
rs4239201	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4324172	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4423463	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4606751	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4793816	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6504160	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6504210	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7211099	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7212220	0.83[ASN][1000 genomes]
rs7213149	0.87[ASN][1000 genomes]
rs7216202	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7218287	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7218563	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7221510	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8072002	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8077516	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8077763	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9898383	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9906658	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9797269	SKAP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46470600-46479200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:46473200-46484400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr17:46473200-46486200	Weak transcription	Thymus	Thymus
4	chr17:46473600-46486200	Weak transcription	Fetal Thymus	thymus
5	chr17:46474200-46478600	Weak transcription	GM12878-XiMat	blood
6	chr17:46474200-46484200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr17:46474200-46484200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr17:46474800-46477600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr17:46475000-46486600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr17:46475800-46484600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr17:46476200-46478800	Genic enhancers	Primary T cells fromperipheralblood	blood
12	chr17:46476400-46477800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr17:46476400-46478000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr17:46477000-46484600	Weak transcription	Primary T cells from cord blood	blood
15	chr17:46477200-46478200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:46477200-46484000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:46477400-46477800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr17:46477400-46478400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr17:46477400-46479400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr17:46477400-46484200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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