Variant report

Variant	rs9906658
Chromosome Location	chr17:46435008-46435009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46430712..46432308-chr17:46432532..46435269,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12603827	0.84[ASN][1000 genomes]
rs12937347	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1396868	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1553750	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2123344	0.86[ASN][1000 genomes]
rs2924250	0.88[ASN][1000 genomes]
rs2924254	0.88[ASN][1000 genomes]
rs2938470	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4239201	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4324172	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4423463	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4606751	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4793816	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504160	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6504210	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7211099	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7212220	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7213149	0.89[ASN][1000 genomes]
rs7216202	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7218287	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7218563	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7221510	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8072002	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077516	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8077763	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9797269	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9898383	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9906658	SKAP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46414600-46450400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr17:46423400-46441800	Weak transcription	GM12878-XiMat	blood
3	chr17:46423400-46451200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr17:46423600-46438200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr17:46423600-46443400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr17:46423600-46453800	Weak transcription	Fetal Thymus	thymus
7	chr17:46423800-46439200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:46426400-46435600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr17:46427200-46442400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr17:46427400-46440600	Weak transcription	Primary T cells from cord blood	blood
11	chr17:46429800-46435200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr17:46429800-46435200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr17:46429800-46435800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr17:46429800-46435800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr17:46429800-46436000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr17:46429800-46439200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr17:46429800-46440600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr17:46430000-46435800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr17:46430000-46438000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr17:46430800-46435600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr17:46434200-46436200	Enhancers	Primary B cells from cord blood	blood
22	chr17:46435000-46435400	Enhancers	HSMM	muscle
23	chr17:46435000-46436200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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