The 2.0 version of rSNPBase

Variant report

Variant rs1260659
Chromosome Location chr6:109398479-109398480
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:109378400-109412000 Weak transcription Fetal Muscle Trunk muscle
2 chr6:109382000-109401200 Weak transcription Brain Hippocampus Middle brain
3 chr6:109383400-109415000 Weak transcription Lung lung
4 chr6:109384600-109408600 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr6:109389000-109398600 Weak transcription Right Ventricle heart
6 chr6:109389200-109401200 Weak transcription Aorta Aorta
7 chr6:109389400-109403600 Weak transcription Spleen Spleen
8 chr6:109391600-109401000 Weak transcription Fetal Brain Female brain
9 chr6:109391800-109402200 Weak transcription Left Ventricle heart
10 chr6:109392600-109399000 Enhancers Skeletal Muscle Female skeletal muscle
11 chr6:109392800-109415000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr6:109393000-109403400 Weak transcription Small Intestine intestine
13 chr6:109393000-109412200 Weak transcription Primary T cells fromperipheralblood blood
14 chr6:109393000-109413800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
15 chr6:109393200-109400600 Weak transcription Brain Substantia Nigra brain
16 chr6:109393200-109400800 Weak transcription Brain Cingulate Gyrus brain
17 chr6:109393200-109412600 Weak transcription Fetal Thymus thymus
18 chr6:109393200-109413200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr6:109393400-109413400 Weak transcription Fetal Intestine Large intestine
20 chr6:109393400-109413400 Weak transcription Fetal Stomach stomach
21 chr6:109394600-109400600 Weak transcription Brain Inferior Temporal Lobe brain
22 chr6:109394600-109401200 Weak transcription Adipose Nuclei Adipose
23 chr6:109394600-109403400 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr6:109394600-109412400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr6:109394800-109398600 Weak transcription Fetal Brain Male brain
26 chr6:109394800-109400400 Weak transcription Rectal Smooth Muscle rectum
27 chr6:109394800-109401000 Weak transcription HSMMtube muscle
28 chr6:109394800-109403200 Weak transcription Monocytes-CD14+_RO01746 blood
29 chr6:109394800-109403400 Weak transcription Primary T cells from cord blood blood
30 chr6:109394800-109411800 Weak transcription Primary T regulatory cells fromperipheralblood blood
31 chr6:109394800-109413400 Weak transcription HSMM muscle
32 chr6:109395000-109408400 Weak transcription Liver Liver
33 chr6:109395000-109412600 Weak transcription Primary T helper naive cells from peripheral blood blood
34 chr6:109395200-109412000 Weak transcription Primary B cells from cord blood blood
35 chr6:109395400-109401000 Weak transcription Fetal Lung lung
36 chr6:109395400-109406200 Weak transcription Fetal Intestine Small intestine
37 chr6:109396200-109398800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
38 chr6:109396800-109409200 Weak transcription Brain Germinal Matrix brain
39 chr6:109397000-109403800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr6:109397200-109398800 Enhancers Colon Smooth Muscle Colon
41 chr6:109397200-109399000 Enhancers Primary hematopoietic stem cells short term culture blood
42 chr6:109397200-109399200 Enhancers Fetal Heart heart
43 chr6:109397200-109408400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr6:109397600-109398800 Enhancers Duodenum Smooth Muscle Duodenum
45 chr6:109397600-109399000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
46 chr6:109397600-109399200 Enhancers Primary hematopoietic stem cells blood
47 chr6:109397600-109403200 Weak transcription Osteobl bone
48 chr6:109397800-109399000 Enhancers Brain Anterior Caudate brain
49 chr6:109397800-109399000 Enhancers Skeletal Muscle Male skeletal muscle
50 chr6:109398000-109400800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015