Variant report

Variant	rs445221
Chromosome Location	chr6:109289592-109289593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109285605..109290030-chr6:109328560..109330696,4	MCF-7	breast:
2	chr6:109268524..109271766-chr6:109286538..109289980,4	MCF-7	breast:
3	chr6:109287541..109290295-chr6:109329249..109332162,2	MCF-7	breast:
4	chr6:109278717..109281148-chr6:109286831..109289699,2	MCF-7	breast:
5	chr6:109287978..109291649-chr6:109291664..109293586,3	MCF-7	breast:
6	chr6:109282080..109285754-chr6:109286903..109289750,3	K562	blood:

Variant related genes	Relation type
ENSG00000080546	Chromatin interaction
ENSG00000118690	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1260659	1.00[EUR][1000 genomes]
rs1894609	1.00[EUR][1000 genomes]
rs3896250	1.00[EUR][1000 genomes]
rs59580934	1.00[EUR][1000 genomes]
rs59722564	1.00[EUR][1000 genomes]
rs6929914	1.00[EUR][1000 genomes]
rs73762648	1.00[EUR][1000 genomes]
rs73762651	1.00[EUR][1000 genomes]
rs9398186	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9480880	1.00[EUR][1000 genomes]
rs9969025	0.92[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830768	chr6:109177268-109357600	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv886532	chr6:109281620-109383659	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109270400-109308200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:109280800-109306800	Weak transcription	Primary T cells from cord blood	blood
3	chr6:109281400-109307200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:109281600-109301400	Weak transcription	Aorta	Aorta
5	chr6:109282800-109291000	Weak transcription	Adipose Nuclei	Adipose
6	chr6:109285800-109307800	Weak transcription	Brain Anterior Caudate	brain
7	chr6:109286800-109290200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:109287200-109290200	Enhancers	Primary B cells from cord blood	blood
9	chr6:109287200-109290600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:109287200-109290600	Enhancers	Fetal Heart	heart
11	chr6:109287200-109293400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:109287400-109290600	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:109287600-109291800	Enhancers	Placenta	Placenta
14	chr6:109287800-109289800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:109287800-109290400	Enhancers	Left Ventricle	heart
16	chr6:109287800-109290400	Enhancers	Stomach Mucosa	stomach
17	chr6:109288000-109289800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:109288000-109289800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:109288000-109290400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:109288200-109290400	Enhancers	Right Ventricle	heart
21	chr6:109288400-109289800	Enhancers	Lung	lung
22	chr6:109288400-109290600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:109288400-109290600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:109288400-109291600	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr6:109288400-109292400	Weak transcription	Psoas Muscle	Psoas
26	chr6:109288400-109307800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:109288600-109289600	Enhancers	HepG2	liver
28	chr6:109288600-109290800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:109288600-109290800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:109288600-109291200	Weak transcription	Osteobl	bone
31	chr6:109288600-109292600	Weak transcription	Fetal Lung	lung
32	chr6:109288600-109301400	Weak transcription	Brain Germinal Matrix	brain
33	chr6:109288600-109301600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:109288600-109307800	Weak transcription	Ovary	ovary
35	chr6:109288800-109289600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:109288800-109289600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:109288800-109289600	Weak transcription	Gastric	stomach
38	chr6:109288800-109289600	Weak transcription	Right Atrium	heart
39	chr6:109288800-109289800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr6:109288800-109289800	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr6:109288800-109290800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:109288800-109291000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:109288800-109291000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:109288800-109291400	Weak transcription	Fetal Intestine Small	intestine
45	chr6:109288800-109291400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:109288800-109291400	Weak transcription	HSMM	muscle
47	chr6:109288800-109293200	Weak transcription	Small Intestine	intestine
48	chr6:109289000-109290600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:109289000-109308600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:109289200-109289600	Weak transcription	Duodenum Mucosa	Duodenum

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