Variant report

Variant	rs9398186
Chromosome Location	chr6:109348146-109348147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:109346882..109349772-chr6:109355176..109359147,4	K562	blood:
2	chr6:109347282..109349357-chr6:109355176..109357328,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1260659	1.00[EUR][1000 genomes]
rs445221	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59580934	1.00[EUR][1000 genomes]
rs59722564	1.00[EUR][1000 genomes]
rs6929914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73762648	1.00[EUR][1000 genomes]
rs73762651	1.00[EUR][1000 genomes]
rs9969025	0.91[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830768	chr6:109177268-109357600	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv886532	chr6:109281620-109383659	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1017230	chr6:109315749-109382424	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109332400-109355800	Weak transcription	Brain Angular Gyrus	brain
2	chr6:109336600-109357200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:109339800-109355000	Weak transcription	Aorta	Aorta
4	chr6:109342000-109354600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:109344400-109349800	Weak transcription	Psoas Muscle	Psoas
6	chr6:109345000-109349600	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:109346000-109355600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:109346400-109349600	Weak transcription	Right Ventricle	heart
9	chr6:109346400-109355000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:109346400-109371400	Weak transcription	Left Ventricle	heart
11	chr6:109346600-109350000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:109346600-109350000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:109346800-109349800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:109347200-109357400	Weak transcription	Primary B cells from cord blood	blood
15	chr6:109347400-109357200	Weak transcription	Primary T cells from cord blood	blood
16	chr6:109347400-109369400	Weak transcription	Pancreas	Pancrea
17	chr6:109347600-109348200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:109347600-109354200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:109347800-109350800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr6:109347800-109354000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:109347800-109356400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:109347800-109358200	Weak transcription	Primary hematopoietic stem cells	blood

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