Variant report

Variant	rs12612861
Chromosome Location	chr2:76984330-76984331
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10188955	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs10195937	1.00[CEU][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12618655	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12620459	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs12713883	0.89[CEU][hapmap];0.85[AMR][1000 genomes]
rs12995505	0.86[AMR][1000 genomes]
rs13008894	0.88[CEU][hapmap];0.85[AMR][1000 genomes]
rs13030721	0.88[CEU][hapmap];0.94[AMR][1000 genomes]
rs1517783	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914507	0.87[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2203925	1.00[AFR][1000 genomes]
rs56748866	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56961208	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59960669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60881718	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6718624	0.88[CEU][hapmap];0.85[AMR][1000 genomes]
rs72917766	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7560515	0.88[CEU][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv582235	chr2:76881210-76997763	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874320	chr2:76971709-77013724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv458263	chr2:76976626-76994984	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76963800-76985800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:76973400-76989200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:76974800-76986600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:76979400-76988200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:76982000-76986400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:76982200-76984600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:76983800-76984600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:76984200-76988600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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