Variant report

Variant	rs12620459
Chromosome Location	chr2:77010696-77010697
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10188955	0.87[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10195937	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[JPT][hapmap];0.88[LWK][hapmap];0.87[MEX][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12612861	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs12618655	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12713883	0.88[CEU][hapmap];0.91[AMR][1000 genomes]
rs12995505	0.87[MEX][hapmap];0.89[AMR][1000 genomes]
rs13008894	0.88[CEU][hapmap];0.87[MEX][hapmap];0.87[AMR][1000 genomes]
rs13030721	0.88[CEU][hapmap];0.87[MEX][hapmap]
rs13353371	0.87[LWK][hapmap]
rs13353373	0.87[LWK][hapmap]
rs13398294	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs13400865	1.00[YRI][hapmap]
rs13405269	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs1400846	0.81[MEX][hapmap]
rs1517783	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs1914507	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56961208	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59006263	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60881718	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6718624	0.88[CEU][hapmap];0.85[MEX][hapmap];0.87[AMR][1000 genomes]
rs73940057	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7560515	0.88[CEU][hapmap];0.81[MEX][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874320	chr2:76971709-77013724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv999822	chr2:76994539-77022762	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
4	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77009000-77039000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:77009200-77013000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:77009400-77013200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:77009400-77022600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:77009600-77038200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:77010000-77010800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:77010400-77012400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr2:77010600-77010800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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