Variant report

Variant	rs12618655
Chromosome Location	chr2:77008488-77008489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10188955	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12612861	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12620459	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13030721	0.84[AMR][1000 genomes]
rs1517783	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1914507	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56748866	1.00[AFR][1000 genomes]
rs56961208	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59006263	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59960669	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs60881718	0.80[EUR][1000 genomes]
rs73940057	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874320	chr2:76971709-77013724	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv999822	chr2:76994539-77022762	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77008400-77008600	Active TSS	H1 Cell Line	embryonic stem cell
2	chr2:77008400-77008800	Active TSS	H9 Cell Line	embryonic stem cell
3	chr2:77008400-77008800	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr2:77008400-77008800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:77008400-77008800	Active TSS	Placenta	Placenta
6	chr2:77008400-77009000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr2:77008400-77009000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr2:77008400-77009000	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr2:77008400-77009200	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr2:77008400-77009200	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr2:77008400-77009200	Active TSS	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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