Variant report
| Variant | rs56961208 |
|---|---|
| Chromosome Location | chr2:76999586-76999587 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10188955 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10195937 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12612861 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs12618655 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12620459 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12713883 | 0.90[AMR][1000 genomes] |
| rs12995505 | 0.88[AMR][1000 genomes] |
| rs13008894 | 0.87[AMR][1000 genomes] |
| rs13030721 | 0.96[AMR][1000 genomes] |
| rs1517783 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1914507 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2203925 | 1.00[AFR][1000 genomes] |
| rs56748866 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs59006263 | 0.89[ASN][1000 genomes] |
| rs59960669 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs60881718 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6718624 | 0.87[AMR][1000 genomes] |
| rs72917766 | 0.88[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs73940057 | 0.81[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7560515 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv874320 | chr2:76971709-77013724 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011401 | chr2:76982546-77068714 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv999822 | chr2:76994539-77022762 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:76998400-77000600 | Strong transcription | ES-I3 Cell Line | embryonic stem cell |
