Variant report

Variant	rs12620444
Chromosome Location	chr2:212649112-212649113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12620559	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12622176	1.00[CHB][hapmap]
rs13035133	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4130781	1.00[CHB][hapmap]
rs4130782	1.00[CHB][hapmap]
rs4132462	1.00[CHB][hapmap]
rs55890667	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58352022	0.91[EUR][1000 genomes]
rs62184481	0.89[EUR][1000 genomes]
rs62184483	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6435670	0.91[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6749448	1.00[CHB][hapmap]
rs6756725	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7556896	1.00[CHB][hapmap]
rs7564414	1.00[JPT][hapmap]
rs7601502	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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