Variant report

Variant	rs6756725
Chromosome Location	chr2:212650162-212650163
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12620013	1.00[JPT][hapmap]
rs12620444	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12620559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12622176	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13035133	1.00[CHB][hapmap]
rs4130781	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4130782	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4132462	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55890667	0.88[EUR][1000 genomes]
rs58352022	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62183034	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62184481	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62184483	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6435670	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs6749448	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7556896	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7564414	1.00[JPT][hapmap]
rs7601502	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links