Variant report

Variant	rs7556896
Chromosome Location	chr2:212590505-212590506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12620444	1.00[CHB][hapmap]
rs12620559	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12622176	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13035133	1.00[CHB][hapmap]
rs35444377	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4130781	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4130782	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4132462	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs55758468	0.90[ASN][1000 genomes]
rs55769536	0.90[ASN][1000 genomes]
rs55897719	0.91[EUR][1000 genomes]
rs56405287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61079605	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62182986	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182989	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62182991	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62182999	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62183021	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62183023	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62183024	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62183028	0.90[ASN][1000 genomes]
rs62183029	0.90[ASN][1000 genomes]
rs62183031	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6749448	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756725	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72946582	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72948506	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7422793	0.82[EUR][1000 genomes]
rs7564414	1.00[JPT][hapmap]
rs7600261	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs7601502	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212569400-212590800	Weak transcription	Fetal Kidney	kidney
2	chr2:212569600-212591800	Weak transcription	Fetal Heart	heart
3	chr2:212571200-212594800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:212575600-212592000	Weak transcription	Aorta	Aorta
5	chr2:212583600-212595400	Weak transcription	Brain Anterior Caudate	brain
6	chr2:212586200-212590800	Weak transcription	Brain Hippocampus Middle	brain
7	chr2:212587400-212595000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:212590400-212594400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:212590400-212594400	Weak transcription	Brain Substantia Nigra	brain

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