Variant report

Variant	rs35444377
Chromosome Location	chr2:212609214-212609215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12622176	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4130781	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4130782	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4132462	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55758468	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55769536	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55897719	0.92[EUR][1000 genomes]
rs56405287	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61079605	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62182986	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62182989	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62182991	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62182999	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62183021	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62183023	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62183024	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62183028	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62183029	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62183031	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6749448	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72946582	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72948506	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7422793	0.90[EUR][1000 genomes]
rs7556896	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7600261	0.93[EUR][1000 genomes]
rs7601502	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212607600-212610000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:212607800-212609600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:212608000-212610000	Enhancers	Brain Substantia Nigra	brain
4	chr2:212608000-212610200	Enhancers	Brain Anterior Caudate	brain
5	chr2:212608000-212610200	Enhancers	Brain Cingulate Gyrus	brain
6	chr2:212608600-212609400	Weak transcription	Brain Hippocampus Middle	brain
7	chr2:212608600-212609600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:212608800-212609800	Weak transcription	Fetal Heart	heart
9	chr2:212608800-212610200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:212609000-212609400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:212609200-212609600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:212609200-212610000	Enhancers	Dnd41	blood
13	chr2:212609200-212610200	Enhancers	Brain Angular Gyrus	brain

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