Variant report

Variant	rs12622176
Chromosome Location	chr2:212596157-212596158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12620444	1.00[CHB][hapmap]
rs12620559	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13035133	1.00[CHB][hapmap]
rs35444377	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4130781	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4130782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4132462	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55758468	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55769536	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55897719	0.94[EUR][1000 genomes]
rs56405287	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61079605	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62182986	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62182989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62182991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62182999	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62183021	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62183023	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62183024	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62183028	0.90[ASN][1000 genomes]
rs62183029	0.90[ASN][1000 genomes]
rs62183031	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6749448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6756725	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72946582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72948506	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7422793	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs7556896	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7564414	1.00[JPT][hapmap]
rs7600261	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs7601502	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212595400-212596400	Enhancers	Brain Cingulate Gyrus	brain
2	chr2:212595400-212596600	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links