Variant report

Variant	rs12631196
Chromosome Location	chr3:158171455-158171456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72523089..72524657-chr3:158169373..158172267,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067225	Chromatin interaction

Extended variants
information (count: 154 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs1095626	0.86[EUR][1000 genomes]
rs1095627	0.86[EUR][1000 genomes]
rs1095628	0.86[EUR][1000 genomes]
rs1095635	0.86[EUR][1000 genomes]
rs1095637	0.86[EUR][1000 genomes]
rs1095638	0.85[EUR][1000 genomes]
rs1095639	0.86[EUR][1000 genomes]
rs1095640	0.86[EUR][1000 genomes]
rs1095641	0.85[EUR][1000 genomes]
rs1095642	0.91[EUR][1000 genomes]
rs1101158	0.86[EUR][1000 genomes]
rs1104288	0.86[EUR][1000 genomes]
rs1104289	0.86[EUR][1000 genomes]
rs11717725	0.83[ASN][1000 genomes]
rs11719188	0.83[ASN][1000 genomes]
rs1193505	0.86[EUR][1000 genomes]
rs1193506	0.86[EUR][1000 genomes]
rs1193507	0.86[EUR][1000 genomes]
rs1193508	0.87[EUR][1000 genomes]
rs1193509	0.86[EUR][1000 genomes]
rs1193510	0.86[EUR][1000 genomes]
rs1193521	0.86[EUR][1000 genomes]
rs1193534	0.85[EUR][1000 genomes]
rs1193535	0.85[EUR][1000 genomes]
rs1193537	0.86[EUR][1000 genomes]
rs1204962	0.86[EUR][1000 genomes]
rs12107103	0.83[ASN][1000 genomes]
rs12107104	0.83[ASN][1000 genomes]
rs1212739	0.85[EUR][1000 genomes]
rs1213048	0.86[EUR][1000 genomes]
rs12496767	0.85[ASN][1000 genomes]
rs12629125	0.83[ASN][1000 genomes]
rs12633594	0.83[ASN][1000 genomes]
rs12638169	0.85[ASN][1000 genomes]
rs13066362	0.86[EUR][1000 genomes]
rs1526191	0.86[EUR][1000 genomes]
rs1526192	0.86[EUR][1000 genomes]
rs1526193	0.86[EUR][1000 genomes]
rs1526194	0.86[EUR][1000 genomes]
rs1618381	0.86[EUR][1000 genomes]
rs1630304	0.86[EUR][1000 genomes]
rs1724652	0.86[EUR][1000 genomes]
rs1724654	0.86[EUR][1000 genomes]
rs1724700	0.86[EUR][1000 genomes]
rs1724704	0.86[EUR][1000 genomes]
rs1730007	0.86[EUR][1000 genomes]
rs1730020	0.86[EUR][1000 genomes]
rs1730040	0.87[EUR][1000 genomes]
rs1730042	0.86[EUR][1000 genomes]
rs1730045	0.86[EUR][1000 genomes]
rs1730058	0.82[EUR][1000 genomes]
rs1730059	0.85[EUR][1000 genomes]
rs1852285	0.86[EUR][1000 genomes]
rs1983469	0.87[EUR][1000 genomes]
rs2362968	0.83[ASN][1000 genomes]
rs2362969	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2362970	0.83[ASN][1000 genomes]
rs2362972	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2682404	0.86[EUR][1000 genomes]
rs2682405	0.86[EUR][1000 genomes]
rs2682406	0.86[EUR][1000 genomes]
rs2693527	0.87[EUR][1000 genomes]
rs2693529	0.86[EUR][1000 genomes]
rs2693530	0.81[EUR][1000 genomes]
rs2693542	0.86[EUR][1000 genomes]
rs2698322	0.86[EUR][1000 genomes]
rs2698323	0.86[EUR][1000 genomes]
rs28820925	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4289388	0.89[ASN][1000 genomes]
rs4561872	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4679828	0.83[ASN][1000 genomes]
rs4680433	0.83[ASN][1000 genomes]
rs4680434	0.83[ASN][1000 genomes]
rs4680436	0.86[ASN][1000 genomes]
rs4680437	0.89[ASN][1000 genomes]
rs6441182	0.86[EUR][1000 genomes]
rs6441195	0.84[ASN][1000 genomes]
rs6441197	0.85[ASN][1000 genomes]
rs6441198	0.89[ASN][1000 genomes]
rs6441200	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6441201	0.87[ASN][1000 genomes]
rs67385174	0.83[ASN][1000 genomes]
rs6800887	0.88[ASN][1000 genomes]
rs6806702	0.81[ASN][1000 genomes]
rs7426603	0.83[ASN][1000 genomes]
rs7430565	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7610691	0.83[ASN][1000 genomes]
rs7621674	0.86[EUR][1000 genomes]
rs7621971	0.86[EUR][1000 genomes]
rs7632059	0.83[ASN][1000 genomes]
rs7636974	0.83[EUR][1000 genomes]
rs7637291	0.86[EUR][1000 genomes]
rs7641954	0.89[ASN][1000 genomes]
rs7643792	0.86[EUR][1000 genomes]
rs827092	0.87[EUR][1000 genomes]
rs827093	0.86[EUR][1000 genomes]
rs827094	0.86[EUR][1000 genomes]
rs827095	0.86[EUR][1000 genomes]
rs827096	0.86[EUR][1000 genomes]
rs827097	0.86[EUR][1000 genomes]
rs827098	0.86[EUR][1000 genomes]
rs827099	0.86[EUR][1000 genomes]
rs827101	0.86[EUR][1000 genomes]
rs827106	0.91[EUR][1000 genomes]
rs827108	0.86[EUR][1000 genomes]
rs827109	0.86[EUR][1000 genomes]
rs827110	0.86[EUR][1000 genomes]
rs827111	0.86[EUR][1000 genomes]
rs827112	0.85[EUR][1000 genomes]
rs827113	0.86[EUR][1000 genomes]
rs827114	0.86[EUR][1000 genomes]
rs827126	0.86[EUR][1000 genomes]
rs827127	0.86[EUR][1000 genomes]
rs827128	0.87[EUR][1000 genomes]
rs827129	0.86[EUR][1000 genomes]
rs827131	0.86[EUR][1000 genomes]
rs827132	0.86[EUR][1000 genomes]
rs827134	0.91[EUR][1000 genomes]
rs827135	0.91[EUR][1000 genomes]
rs827137	0.86[EUR][1000 genomes]
rs827140	0.86[EUR][1000 genomes]
rs827163	0.86[EUR][1000 genomes]
rs827164	0.86[EUR][1000 genomes]
rs827166	0.86[EUR][1000 genomes]
rs827171	0.85[EUR][1000 genomes]
rs827176	0.85[EUR][1000 genomes]
rs827177	0.85[EUR][1000 genomes]
rs827178	0.85[EUR][1000 genomes]
rs827179	0.85[EUR][1000 genomes]
rs827180	0.85[EUR][1000 genomes]
rs827181	0.83[EUR][1000 genomes]
rs827184	0.90[EUR][1000 genomes]
rs844119	0.86[EUR][1000 genomes]
rs864332	0.86[EUR][1000 genomes]
rs865454	0.87[EUR][1000 genomes]
rs865455	0.85[EUR][1000 genomes]
rs9784311	0.87[EUR][1000 genomes]
rs9810345	0.87[ASN][1000 genomes]
rs9820370	0.87[EUR][1000 genomes]
rs9823076	0.83[ASN][1000 genomes]
rs9838399	0.83[EUR][1000 genomes]
rs9843089	0.82[ASN][1000 genomes]
rs9847045	0.82[ASN][1000 genomes]
rs9847316	0.85[ASN][1000 genomes]
rs9847460	0.83[ASN][1000 genomes]
rs9850856	0.83[ASN][1000 genomes]
rs9870802	0.83[ASN][1000 genomes]
rs9872889	0.85[ASN][1000 genomes]
rs9877909	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv967206	chr3:158149860-158176292	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158156400-158176200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:158161800-158171800	Weak transcription	GM12878-XiMat	blood
3	chr3:158165600-158172600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:158169200-158176000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:158169600-158182400	Weak transcription	Primary B cells from cord blood	blood
6	chr3:158171400-158177800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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