Variant report

Variant	rs827134
Chromosome Location	chr3:158069197-158069198
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 205 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:200)

rs_ID	r²[population]
rs10936129	0.99[ASN][1000 genomes]
rs10936133	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10936134	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1095626	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1095627	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1095628	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1095635	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1095637	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1095638	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1095639	0.93[EUR][1000 genomes]
rs1095640	0.93[EUR][1000 genomes]
rs1095641	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs1095642	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1101158	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1104288	0.92[EUR][1000 genomes]
rs1104289	0.93[EUR][1000 genomes]
rs11709804	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11714869	0.86[JPT][hapmap]
rs11717725	0.86[JPT][hapmap]
rs1193505	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1193506	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1193507	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1193508	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1193509	1.00[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1193510	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1193521	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1193534	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1193535	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1193537	0.93[EUR][1000 genomes]
rs1204962	0.92[EUR][1000 genomes]
rs1210359	0.81[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12107103	0.86[JPT][hapmap]
rs12107104	0.86[JPT][hapmap]
rs1212739	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1213048	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12494098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12496767	0.85[JPT][hapmap]
rs12629125	0.87[JPT][hapmap]
rs12629587	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12631196	0.91[EUR][1000 genomes]
rs12632998	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12633594	0.86[JPT][hapmap]
rs13066362	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1369562	0.86[JPT][hapmap]
rs1526191	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1526192	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1526193	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1526194	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1618381	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1630304	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1724652	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1724654	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1724700	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1724704	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1730007	1.00[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1730020	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1730028	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1730040	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1730042	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1730045	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1730058	0.89[EUR][1000 genomes]
rs1730059	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1852285	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1978779	0.82[JPT][hapmap]
rs1978781	0.85[JPT][hapmap]
rs1983469	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2176893	0.99[ASN][1000 genomes]
rs2222326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2362965	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2362969	1.00[CEU][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2362972	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2682404	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2682405	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2682406	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2693527	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2693529	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs2693530	0.87[EUR][1000 genomes]
rs2693542	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2698322	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2698323	0.93[EUR][1000 genomes]
rs28578723	0.96[ASN][1000 genomes]
rs28813180	0.96[ASN][1000 genomes]
rs28820925	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3845981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4289388	0.87[JPT][hapmap]
rs4309677	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4510417	0.86[JPT][hapmap]
rs4561872	0.84[EUR][1000 genomes]
rs4679822	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4680426	0.99[ASN][1000 genomes]
rs4680431	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4680433	0.86[JPT][hapmap]
rs4680436	0.86[JPT][hapmap]
rs4680437	0.87[JPT][hapmap]
rs56387731	0.96[ASN][1000 genomes]
rs57519456	0.94[ASN][1000 genomes]
rs60336101	0.97[ASN][1000 genomes]
rs6414388	0.89[ASN][1000 genomes]
rs6414390	0.89[ASN][1000 genomes]
rs6441182	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6441183	0.86[EUR][1000 genomes]
rs6441184	0.87[EUR][1000 genomes]
rs6441188	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6441200	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6441201	0.86[JPT][hapmap]
rs6767008	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6772340	0.99[ASN][1000 genomes]
rs6773939	0.87[ASN][1000 genomes]
rs6774461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs67761009	0.99[ASN][1000 genomes]
rs6778202	0.83[JPT][hapmap]
rs6778370	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6783284	0.80[JPT][hapmap]
rs6785063	0.98[ASN][1000 genomes]
rs6787172	0.87[JPT][hapmap];0.95[YRI][hapmap]
rs6788703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6791431	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6797629	0.96[ASN][1000 genomes]
rs6800887	0.86[JPT][hapmap]
rs699927	0.86[EUR][1000 genomes]
rs73170315	0.99[ASN][1000 genomes]
rs73170348	0.98[ASN][1000 genomes]
rs7430565	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7610691	0.89[CHB][hapmap]
rs7610713	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs7614259	0.99[ASN][1000 genomes]
rs7621674	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7621971	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7626909	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7632059	0.86[JPT][hapmap]
rs7636974	0.89[EUR][1000 genomes]
rs7637291	0.92[EUR][1000 genomes]
rs7639867	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7641954	0.87[JPT][hapmap]
rs7643792	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7648196	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs827092	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs827093	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs827094	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs827095	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs827096	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827097	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827098	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs827099	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827101	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827106	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs827108	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs827109	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs827110	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs827111	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs827112	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs827113	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs827114	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs827126	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827127	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs827128	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs827129	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827131	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827132	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827135	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs827137	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827140	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827154	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs827163	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827164	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827166	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs827171	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs827176	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs827177	1.00[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs827178	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs827179	1.00[CEU][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes]
rs827180	0.92[EUR][1000 genomes]
rs827181	0.90[EUR][1000 genomes]
rs827184	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs844119	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs864332	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs864877	0.82[EUR][1000 genomes]
rs865454	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs865455	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs939114	0.86[JPT][hapmap]
rs939117	0.86[JPT][hapmap]
rs9784311	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9809952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9811217	0.87[JPT][hapmap]
rs9820370	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9823076	0.87[JPT][hapmap]
rs9827781	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9835244	0.82[JPT][hapmap]
rs9838399	0.90[EUR][1000 genomes]
rs9857883	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9867152	0.96[ASN][1000 genomes]
rs9867617	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9870802	0.87[JPT][hapmap]
rs9872089	0.99[ASN][1000 genomes]
rs9876322	0.86[JPT][hapmap]
rs9877909	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9879545	0.96[ASN][1000 genomes]
rs9880806	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9881630	0.96[ASN][1000 genomes]
rs9882274	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158047800-158077800	Weak transcription	Gastric	stomach
2	chr3:158048200-158079400	Weak transcription	Right Ventricle	heart
3	chr3:158055000-158077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:158055200-158086000	Weak transcription	Left Ventricle	heart
5	chr3:158057800-158079600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:158060000-158069800	Weak transcription	Primary B cells from cord blood	blood
7	chr3:158060000-158069800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:158068800-158077400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:158069000-158069600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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