Variant report

Variant	rs2362969
Chromosome Location	chr3:158128357-158128358
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 212 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:205)

rs_ID	r²[population]
rs10936133	0.87[JPT][hapmap];0.80[YRI][hapmap]
rs10936134	0.87[JPT][hapmap];0.80[YRI][hapmap]
rs10936146	0.92[YRI][hapmap]
rs1095626	0.91[EUR][1000 genomes]
rs1095627	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs1095628	0.91[EUR][1000 genomes]
rs1095635	0.91[EUR][1000 genomes]
rs1095637	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1095638	0.90[EUR][1000 genomes]
rs1095639	0.91[EUR][1000 genomes]
rs1095640	0.91[EUR][1000 genomes]
rs1095641	1.00[CEU][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes]
rs1095642	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1101158	0.91[EUR][1000 genomes]
rs1104288	0.91[EUR][1000 genomes]
rs1104289	0.91[EUR][1000 genomes]
rs11709804	0.87[JPT][hapmap]
rs11714869	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs11717725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11719188	0.98[ASN][1000 genomes]
rs1193505	0.91[EUR][1000 genomes]
rs1193506	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs1193507	0.91[EUR][1000 genomes]
rs1193508	0.92[EUR][1000 genomes]
rs1193509	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs1193510	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs1193521	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs1193534	0.90[EUR][1000 genomes]
rs1193535	0.90[EUR][1000 genomes]
rs1193537	0.91[EUR][1000 genomes]
rs1204962	0.91[EUR][1000 genomes]
rs1210359	0.85[JPT][hapmap]
rs12107103	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12107104	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1212739	0.90[EUR][1000 genomes]
rs1213048	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs12494098	0.87[JPT][hapmap]
rs12496767	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[ASN][1000 genomes]
rs12629125	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12629587	0.85[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs12631196	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12632998	0.87[JPT][hapmap]
rs12633594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12638169	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13066362	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs1369562	0.81[JPT][hapmap];0.81[YRI][hapmap]
rs1526191	0.91[EUR][1000 genomes]
rs1526192	0.91[EUR][1000 genomes]
rs1526193	0.91[EUR][1000 genomes]
rs1526194	0.91[EUR][1000 genomes]
rs1595028	0.80[YRI][hapmap]
rs1618381	0.91[EUR][1000 genomes]
rs1630304	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs1724652	0.91[EUR][1000 genomes]
rs1724654	0.91[EUR][1000 genomes]
rs1724700	0.91[EUR][1000 genomes]
rs1724704	0.91[EUR][1000 genomes]
rs1730007	1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes]
rs1730020	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs1730040	1.00[CEU][hapmap];0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1730042	0.91[EUR][1000 genomes]
rs1730045	0.91[EUR][1000 genomes]
rs1730058	0.88[EUR][1000 genomes]
rs1730059	0.91[EUR][1000 genomes]
rs1852285	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs1978779	0.84[YRI][hapmap]
rs1978781	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs1983469	0.92[EUR][1000 genomes]
rs2222326	0.87[JPT][hapmap]
rs2362965	0.84[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2362968	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2362970	0.99[ASN][1000 genomes]
rs2362972	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2682404	0.91[EUR][1000 genomes]
rs2682405	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs2682406	0.92[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs2693527	0.92[EUR][1000 genomes]
rs2693529	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs2693530	0.86[EUR][1000 genomes]
rs2693542	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs2698322	0.91[EUR][1000 genomes]
rs2698323	0.91[EUR][1000 genomes]
rs28820925	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3845981	0.87[JPT][hapmap]
rs4289388	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4309677	0.87[JPT][hapmap];0.83[YRI][hapmap]
rs4510417	0.81[JPT][hapmap];0.88[YRI][hapmap]
rs4561872	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4679828	0.99[ASN][1000 genomes]
rs4680431	0.85[JPT][hapmap]
rs4680433	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4680434	0.99[ASN][1000 genomes]
rs4680436	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4680437	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6414388	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6414390	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6441182	0.91[EUR][1000 genomes]
rs6441183	0.85[EUR][1000 genomes]
rs6441184	0.86[EUR][1000 genomes]
rs6441188	0.86[JPT][hapmap]
rs6441195	0.97[ASN][1000 genomes]
rs6441197	0.98[ASN][1000 genomes]
rs6441198	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6441200	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441201	0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[ASN][1000 genomes]
rs6441206	0.82[YRI][hapmap]
rs67385174	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6767008	0.87[JPT][hapmap]
rs6774461	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs6778202	0.96[YRI][hapmap]
rs6778370	0.86[JPT][hapmap]
rs6783284	0.92[YRI][hapmap]
rs6787172	0.82[JPT][hapmap]
rs6788703	0.87[JPT][hapmap];0.83[YRI][hapmap]
rs6791431	0.86[JPT][hapmap]
rs6795376	0.82[YRI][hapmap]
rs6800887	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs6806702	0.97[ASN][1000 genomes]
rs699927	0.84[EUR][1000 genomes]
rs7426603	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7430565	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7610691	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs7610713	0.81[JPT][hapmap];0.81[YRI][hapmap]
rs7620927	0.81[YRI][hapmap]
rs7621674	0.91[EUR][1000 genomes]
rs7621971	0.91[EUR][1000 genomes]
rs7632059	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7636974	0.88[EUR][1000 genomes]
rs7637291	0.91[EUR][1000 genomes]
rs7639867	0.81[JPT][hapmap]
rs7641954	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7643792	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs7648196	0.85[CHB][hapmap];0.87[JPT][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7648618	0.81[YRI][hapmap]
rs827092	1.00[CEU][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes]
rs827093	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs827094	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs827095	0.91[EUR][1000 genomes]
rs827096	0.91[EUR][1000 genomes]
rs827097	0.91[EUR][1000 genomes]
rs827098	0.91[EUR][1000 genomes]
rs827099	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs827101	0.91[EUR][1000 genomes]
rs827106	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs827108	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs827109	0.91[EUR][1000 genomes]
rs827110	0.91[EUR][1000 genomes]
rs827111	0.91[EUR][1000 genomes]
rs827112	0.90[EUR][1000 genomes]
rs827113	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs827114	0.91[EUR][1000 genomes]
rs827126	0.91[EUR][1000 genomes]
rs827127	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs827128	0.92[EUR][1000 genomes]
rs827129	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs827131	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs827132	0.91[EUR][1000 genomes]
rs827134	1.00[CEU][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs827135	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs827137	0.91[EUR][1000 genomes]
rs827140	0.91[EUR][1000 genomes]
rs827163	0.91[EUR][1000 genomes]
rs827164	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs827166	0.91[EUR][1000 genomes]
rs827171	1.00[CEU][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs827176	1.00[CEU][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes]
rs827177	1.00[CEU][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes]
rs827178	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs827179	1.00[CEU][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes]
rs827180	0.90[EUR][1000 genomes]
rs827181	0.88[EUR][1000 genomes]
rs827184	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs844119	0.91[EUR][1000 genomes]
rs864332	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes]
rs864877	0.81[EUR][1000 genomes]
rs865454	0.92[EUR][1000 genomes]
rs865455	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs939114	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs939117	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs9784311	0.92[EUR][1000 genomes]
rs9809952	0.84[JPT][hapmap]
rs9810345	0.92[ASN][1000 genomes]
rs9810887	0.82[YRI][hapmap]
rs9811217	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs9819134	0.82[YRI][hapmap]
rs9820370	0.92[EUR][1000 genomes]
rs9823076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9827781	0.91[JPT][hapmap]
rs9835244	0.92[YRI][hapmap]
rs9838399	0.88[EUR][1000 genomes]
rs9843089	0.98[ASN][1000 genomes]
rs9847045	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9847316	0.95[ASN][1000 genomes]
rs9847460	0.99[ASN][1000 genomes]
rs9850856	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9858318	0.81[YRI][hapmap]
rs9859129	0.81[YRI][hapmap]
rs9867617	0.90[JPT][hapmap]
rs9870802	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.99[ASN][1000 genomes]
rs9872889	0.88[ASN][1000 genomes]
rs9876322	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9877909	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880806	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs9882274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs9883657	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1000904	chr3:158094357-158159317	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1004480	chr3:158102068-158129826	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv536776	chr3:158102068-158129826	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158124600-158146600	Weak transcription	Primary B cells from cord blood	blood
2	chr3:158128000-158129200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:158128200-158128600	Enhancers	HUES6 Cell Line	embryonic stem cell

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