Variant report

Variant	rs6787172
Chromosome Location	chr3:158187811-158187812
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10936133	0.87[JPT][hapmap]
rs10936134	0.87[JPT][hapmap]
rs10936146	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1095642	0.87[JPT][hapmap]
rs11709804	0.87[JPT][hapmap]
rs11714821	0.99[ASN][1000 genomes]
rs11714869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11717725	0.81[JPT][hapmap]
rs1193506	0.87[JPT][hapmap]
rs1193509	0.86[JPT][hapmap]
rs1193510	0.86[JPT][hapmap]
rs1193521	0.87[JPT][hapmap]
rs12107103	0.81[JPT][hapmap]
rs12107104	0.81[JPT][hapmap]
rs1213048	0.86[JPT][hapmap]
rs12494098	0.87[JPT][hapmap]
rs12496767	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs12629125	0.82[JPT][hapmap]
rs12629587	0.86[JPT][hapmap]
rs12632998	0.86[JPT][hapmap]
rs12633594	0.81[JPT][hapmap]
rs13066362	0.86[JPT][hapmap];0.95[YRI][hapmap]
rs1369562	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1435641	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1595030	0.99[ASN][1000 genomes]
rs1630304	0.87[JPT][hapmap]
rs1656365	0.82[EUR][1000 genomes]
rs1656373	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1656374	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1656376	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1714507	0.96[CEU][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1714524	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1730007	0.81[JPT][hapmap]
rs1730020	0.87[JPT][hapmap]
rs1730040	0.87[JPT][hapmap];0.95[YRI][hapmap]
rs1852285	0.86[JPT][hapmap]
rs1978779	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1978781	0.82[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs2222326	0.87[JPT][hapmap]
rs2362965	0.86[JPT][hapmap]
rs2362969	0.82[JPT][hapmap]
rs2362972	0.82[ASN][1000 genomes]
rs2682405	0.86[JPT][hapmap]
rs2682406	0.87[JPT][hapmap]
rs2693542	0.87[JPT][hapmap]
rs3845981	0.87[JPT][hapmap]
rs4289388	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4309677	0.87[JPT][hapmap]
rs4431160	0.98[ASN][1000 genomes]
rs4510417	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4680431	0.85[JPT][hapmap]
rs4680433	0.81[JPT][hapmap]
rs4680436	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs4680437	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4680439	0.93[ASN][1000 genomes]
rs6441188	0.86[JPT][hapmap]
rs6441198	0.82[ASN][1000 genomes]
rs6441201	0.83[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs6441203	0.99[ASN][1000 genomes]
rs6441204	0.99[ASN][1000 genomes]
rs6767008	0.86[JPT][hapmap]
rs6774461	0.86[JPT][hapmap];0.85[YRI][hapmap]
rs6778202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6778370	0.86[JPT][hapmap]
rs6780896	0.98[ASN][1000 genomes]
rs6783284	0.90[JPT][hapmap];0.99[ASN][1000 genomes]
rs6788703	0.87[JPT][hapmap]
rs6791431	0.86[JPT][hapmap]
rs6800887	0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs7430565	0.81[JPT][hapmap];0.95[YRI][hapmap]
rs7610713	0.90[JPT][hapmap]
rs7632059	0.81[JPT][hapmap]
rs7639867	0.80[JPT][hapmap]
rs7641954	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs7643792	0.86[JPT][hapmap]
rs7648196	0.87[JPT][hapmap]
rs7649463	0.99[ASN][1000 genomes]
rs827099	0.86[JPT][hapmap]
rs827106	0.86[JPT][hapmap];0.95[YRI][hapmap]
rs827127	0.87[JPT][hapmap]
rs827129	0.86[JPT][hapmap]
rs827131	0.87[JPT][hapmap]
rs827134	0.87[JPT][hapmap];0.95[YRI][hapmap]
rs827135	0.81[JPT][hapmap]
rs827164	0.87[JPT][hapmap]
rs864332	0.86[JPT][hapmap]
rs939114	0.81[JPT][hapmap]
rs939117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9809952	0.83[JPT][hapmap]
rs9810114	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs9811217	0.82[JPT][hapmap]
rs9812624	0.98[ASN][1000 genomes]
rs9823076	0.80[JPT][hapmap]
rs9827781	0.90[JPT][hapmap]
rs9835244	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs9865460	0.82[ASN][1000 genomes]
rs9867617	0.89[JPT][hapmap]
rs9870802	0.82[JPT][hapmap]
rs9872889	0.84[ASN][1000 genomes]
rs9876322	0.81[JPT][hapmap]
rs9880806	0.86[JPT][hapmap]
rs9882274	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1004124	chr3:158146715-158808638	Genic enhancers Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1013046	chr3:158176582-158244606	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1014557	chr3:158176582-158251602	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv877690	chr3:158184263-158296916	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6787172	RP11-538P18.2	cis	Artery Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158186600-158188800	Weak transcription	Fetal Lung	lung

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