Variant report

Variant	rs9827781
Chromosome Location	chr3:158050196-158050197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158048483..158050951-chr3:158053605..158056393,2	MCF-7	breast:

Extended variants
information (count: 223 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:218)

rs_ID	r²[population]
rs10936129	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10936133	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10936134	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10936146	0.84[JPT][hapmap]
rs1095626	0.90[ASN][1000 genomes]
rs1095627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1095628	0.87[ASN][1000 genomes]
rs1095635	0.87[ASN][1000 genomes]
rs1095637	0.83[CEU][hapmap];0.86[ASN][1000 genomes]
rs1095638	0.87[ASN][1000 genomes]
rs1095639	0.87[ASN][1000 genomes]
rs1095640	0.87[ASN][1000 genomes]
rs1095641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1095642	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1101158	0.89[ASN][1000 genomes]
rs1104288	0.87[ASN][1000 genomes]
rs1104289	0.87[ASN][1000 genomes]
rs11709804	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs11714869	0.86[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap]
rs11717725	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11719188	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1193505	0.89[ASN][1000 genomes]
rs1193506	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1193507	0.89[ASN][1000 genomes]
rs1193508	0.90[ASN][1000 genomes]
rs1193509	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1193510	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1193521	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1193534	0.86[ASN][1000 genomes]
rs1193535	0.86[ASN][1000 genomes]
rs1193537	0.87[ASN][1000 genomes]
rs1204962	0.87[ASN][1000 genomes]
rs1210359	1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs12107103	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12107104	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1212739	0.90[ASN][1000 genomes]
rs1213048	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12494098	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12496767	0.80[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs12629125	1.00[CEU][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12629587	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12632998	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12633594	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12638169	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13066362	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1369562	0.86[GIH][hapmap];0.90[JPT][hapmap];0.80[TSI][hapmap]
rs1526191	0.89[ASN][1000 genomes]
rs1526192	0.90[ASN][1000 genomes]
rs1526193	0.89[ASN][1000 genomes]
rs1526194	0.89[ASN][1000 genomes]
rs1618381	0.90[ASN][1000 genomes]
rs1630304	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1714518	0.81[GIH][hapmap]
rs1724652	0.90[ASN][1000 genomes]
rs1724654	0.87[ASN][1000 genomes]
rs1724700	0.91[ASN][1000 genomes]
rs1724704	0.90[ASN][1000 genomes]
rs1730007	0.94[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1730020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1730040	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1730042	0.89[ASN][1000 genomes]
rs1730045	0.89[ASN][1000 genomes]
rs1730058	0.87[ASN][1000 genomes]
rs1730059	0.82[ASN][1000 genomes]
rs1852285	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1978779	0.85[JPT][hapmap]
rs1978781	0.86[GIH][hapmap];0.90[JPT][hapmap];0.80[TSI][hapmap]
rs1983469	0.90[ASN][1000 genomes]
rs2176893	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2222326	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2362965	1.00[CEU][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2362968	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2362969	0.91[JPT][hapmap]
rs2362970	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2682404	0.89[ASN][1000 genomes]
rs2682405	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2682406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2693527	0.89[ASN][1000 genomes]
rs2693529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2693530	0.82[ASN][1000 genomes]
rs2693542	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2698322	0.89[ASN][1000 genomes]
rs2698323	0.87[ASN][1000 genomes]
rs28578723	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28813180	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3845981	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4289388	0.84[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4309677	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4510417	0.84[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap]
rs4679822	1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs4679828	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4680426	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4680431	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4680433	0.89[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4680434	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4680436	0.89[ASW][hapmap];0.92[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4680437	0.92[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56387731	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57519456	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60336101	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6414388	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6414390	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6441182	0.87[ASN][1000 genomes]
rs6441188	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6441195	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6441197	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6441198	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6441201	0.93[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs67385174	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6767008	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6772237	0.80[EUR][1000 genomes]
rs6772340	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6773939	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6774461	0.95[CHD][hapmap];1.00[JPT][hapmap]
rs67761009	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6778202	0.88[JPT][hapmap]
rs6778370	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap]
rs6783284	0.81[GIH][hapmap];0.80[JPT][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap]
rs6785063	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6787172	0.90[JPT][hapmap]
rs6788703	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6791431	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap]
rs6797629	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6800887	0.92[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.96[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6806702	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73170315	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73170348	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7426603	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7430565	0.90[JPT][hapmap]
rs7610691	0.91[CEU][hapmap];0.83[JPT][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7610713	0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7614259	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7620927	0.83[GIH][hapmap]
rs7621674	0.89[ASN][1000 genomes]
rs7621971	0.89[ASN][1000 genomes]
rs7626909	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7630443	0.81[CEU][hapmap]
rs7632059	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7636974	0.87[ASN][1000 genomes]
rs7637291	0.81[ASN][1000 genomes]
rs7639867	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7641954	0.92[CEU][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7643792	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7648196	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7648618	0.83[GIH][hapmap]
rs827092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs827093	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs827094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs827095	0.92[ASN][1000 genomes]
rs827096	0.89[ASN][1000 genomes]
rs827097	0.89[ASN][1000 genomes]
rs827098	0.87[ASN][1000 genomes]
rs827099	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs827101	0.89[ASN][1000 genomes]
rs827106	0.84[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs827108	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs827109	0.90[ASN][1000 genomes]
rs827110	0.90[ASN][1000 genomes]
rs827111	0.90[ASN][1000 genomes]
rs827112	0.90[ASN][1000 genomes]
rs827113	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs827114	0.90[ASN][1000 genomes]
rs827126	0.89[ASN][1000 genomes]
rs827127	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs827128	0.87[ASN][1000 genomes]
rs827129	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs827131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs827132	0.89[ASN][1000 genomes]
rs827134	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs827135	0.83[ASW][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs827137	0.89[ASN][1000 genomes]
rs827140	0.89[ASN][1000 genomes]
rs827154	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs827163	0.89[ASN][1000 genomes]
rs827164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs827166	0.89[ASN][1000 genomes]
rs827171	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs827176	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs827177	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs827178	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs827179	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs827180	0.87[ASN][1000 genomes]
rs827181	0.85[ASN][1000 genomes]
rs827184	0.84[ASN][1000 genomes]
rs844119	0.89[ASN][1000 genomes]
rs864332	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs865454	0.87[ASN][1000 genomes]
rs865455	0.93[ASN][1000 genomes]
rs939114	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap]
rs939117	0.83[GIH][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap]
rs9784311	0.90[ASN][1000 genomes]
rs9809952	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9810114	0.80[JPT][hapmap]
rs9810345	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9811217	1.00[CEU][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap]
rs9820370	0.89[ASN][1000 genomes]
rs9823076	1.00[CEU][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9835244	0.86[JPT][hapmap]
rs9838399	0.86[ASN][1000 genomes]
rs9843089	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9847045	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9847316	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9847460	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9850856	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9857883	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs9858318	0.83[GIH][hapmap]
rs9859129	0.83[GIH][hapmap]
rs9867152	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9867617	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9870802	0.92[CEU][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9872089	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9872889	0.82[EUR][1000 genomes]
rs9876322	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap]
rs9879545	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9880806	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs9881630	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9882274	1.00[CEU][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap]
rs9883657	0.83[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs9827781	LXN	cis	cerebellum	SCAN
rs9827781	RSRC1	Cis_1M	lymphoblastoid	RTeQTL
rs9827781	GFM1	cis	cerebellum	SCAN
rs9827781	RSRC1	cis	Esophagus Muscularis	GTEx
rs9827781	RSRC1	cis	cerebellum	SCAN
rs9827781	LXN	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157993400-158054600	Weak transcription	Primary T cells from cord blood	blood
2	chr3:158047000-158055400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:158047800-158064800	Weak transcription	Ovary	ovary
4	chr3:158047800-158077800	Weak transcription	Gastric	stomach
5	chr3:158048000-158054000	Weak transcription	Left Ventricle	heart
6	chr3:158048000-158056400	Weak transcription	Esophagus	oesophagus
7	chr3:158048000-158059800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:158048200-158053800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:158048200-158079400	Weak transcription	Right Ventricle	heart
10	chr3:158049000-158052400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:158049000-158052600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:158050000-158054200	Weak transcription	Dnd41	blood

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