Variant report

Variant	rs9877909
Chromosome Location	chr3:158144264-158144265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:158136221..158139181-chr3:158142409..158144374,2	K562	blood:

Extended variants
information (count: 161 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs1095626	0.89[EUR][1000 genomes]
rs1095627	0.89[EUR][1000 genomes]
rs1095628	0.89[EUR][1000 genomes]
rs1095635	0.89[EUR][1000 genomes]
rs1095637	0.89[EUR][1000 genomes]
rs1095638	0.88[EUR][1000 genomes]
rs1095639	0.89[EUR][1000 genomes]
rs1095640	0.89[EUR][1000 genomes]
rs1095641	0.88[EUR][1000 genomes]
rs1095642	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1101158	0.89[EUR][1000 genomes]
rs1104288	0.89[EUR][1000 genomes]
rs1104289	0.89[EUR][1000 genomes]
rs11717725	0.99[ASN][1000 genomes]
rs11719188	0.98[ASN][1000 genomes]
rs1193505	0.89[EUR][1000 genomes]
rs1193506	0.89[EUR][1000 genomes]
rs1193507	0.89[EUR][1000 genomes]
rs1193508	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1193509	0.89[EUR][1000 genomes]
rs1193510	0.89[EUR][1000 genomes]
rs1193521	0.89[EUR][1000 genomes]
rs1193534	0.88[EUR][1000 genomes]
rs1193535	0.88[EUR][1000 genomes]
rs1193537	0.89[EUR][1000 genomes]
rs1204962	0.89[EUR][1000 genomes]
rs12107103	0.99[ASN][1000 genomes]
rs12107104	0.99[ASN][1000 genomes]
rs1212739	0.88[EUR][1000 genomes]
rs1213048	0.89[EUR][1000 genomes]
rs12496767	0.88[ASN][1000 genomes]
rs12629125	0.99[ASN][1000 genomes]
rs12629587	0.85[ASN][1000 genomes]
rs12631196	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12633594	0.99[ASN][1000 genomes]
rs12638169	0.98[ASN][1000 genomes]
rs13066362	0.89[EUR][1000 genomes]
rs1526191	0.89[EUR][1000 genomes]
rs1526192	0.89[EUR][1000 genomes]
rs1526193	0.89[EUR][1000 genomes]
rs1526194	0.89[EUR][1000 genomes]
rs1618381	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1630304	0.89[EUR][1000 genomes]
rs1724652	0.89[EUR][1000 genomes]
rs1724654	0.89[EUR][1000 genomes]
rs1724700	0.89[EUR][1000 genomes]
rs1724704	0.89[EUR][1000 genomes]
rs1730007	0.89[EUR][1000 genomes]
rs1730020	0.89[EUR][1000 genomes]
rs1730040	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1730042	0.89[EUR][1000 genomes]
rs1730045	0.89[EUR][1000 genomes]
rs1730058	0.86[EUR][1000 genomes]
rs1730059	0.89[EUR][1000 genomes]
rs1852285	0.89[EUR][1000 genomes]
rs1983469	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2362965	0.83[ASN][1000 genomes]
rs2362968	0.99[ASN][1000 genomes]
rs2362969	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2362970	0.99[ASN][1000 genomes]
rs2362972	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2682404	0.89[EUR][1000 genomes]
rs2682405	0.89[EUR][1000 genomes]
rs2682406	0.89[EUR][1000 genomes]
rs2693527	0.90[EUR][1000 genomes]
rs2693529	0.89[EUR][1000 genomes]
rs2693530	0.84[EUR][1000 genomes]
rs2693542	0.89[EUR][1000 genomes]
rs2698322	0.89[EUR][1000 genomes]
rs2698323	0.89[EUR][1000 genomes]
rs28820925	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4289388	0.94[ASN][1000 genomes]
rs4561872	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4679828	0.99[ASN][1000 genomes]
rs4680433	0.99[ASN][1000 genomes]
rs4680434	0.99[ASN][1000 genomes]
rs4680436	0.96[ASN][1000 genomes]
rs4680437	0.92[ASN][1000 genomes]
rs6414388	0.85[ASN][1000 genomes]
rs6414390	0.85[ASN][1000 genomes]
rs6441182	0.89[EUR][1000 genomes]
rs6441183	0.83[EUR][1000 genomes]
rs6441184	0.84[EUR][1000 genomes]
rs6441195	0.97[ASN][1000 genomes]
rs6441197	0.98[ASN][1000 genomes]
rs6441198	0.94[ASN][1000 genomes]
rs6441200	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441201	0.89[ASN][1000 genomes]
rs67385174	0.98[ASN][1000 genomes]
rs6800887	0.93[ASN][1000 genomes]
rs6806702	0.97[ASN][1000 genomes]
rs699927	0.82[EUR][1000 genomes]
rs7426603	0.98[ASN][1000 genomes]
rs7430565	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7610691	0.99[ASN][1000 genomes]
rs7621674	0.89[EUR][1000 genomes]
rs7621971	0.89[EUR][1000 genomes]
rs7632059	0.99[ASN][1000 genomes]
rs7636974	0.86[EUR][1000 genomes]
rs7637291	0.89[EUR][1000 genomes]
rs7641954	0.94[ASN][1000 genomes]
rs7643792	0.89[EUR][1000 genomes]
rs7648196	0.85[ASN][1000 genomes]
rs827092	0.90[EUR][1000 genomes]
rs827093	0.89[EUR][1000 genomes]
rs827094	0.89[EUR][1000 genomes]
rs827095	0.89[EUR][1000 genomes]
rs827096	0.89[EUR][1000 genomes]
rs827097	0.89[EUR][1000 genomes]
rs827098	0.89[EUR][1000 genomes]
rs827099	0.89[EUR][1000 genomes]
rs827101	0.89[EUR][1000 genomes]
rs827106	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs827108	0.89[EUR][1000 genomes]
rs827109	0.89[EUR][1000 genomes]
rs827110	0.89[EUR][1000 genomes]
rs827111	0.89[EUR][1000 genomes]
rs827112	0.88[EUR][1000 genomes]
rs827113	0.89[EUR][1000 genomes]
rs827114	0.89[EUR][1000 genomes]
rs827126	0.89[EUR][1000 genomes]
rs827127	0.89[EUR][1000 genomes]
rs827128	0.90[EUR][1000 genomes]
rs827129	0.89[EUR][1000 genomes]
rs827131	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs827132	0.89[EUR][1000 genomes]
rs827134	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs827135	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs827137	0.89[EUR][1000 genomes]
rs827140	0.89[EUR][1000 genomes]
rs827163	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs827164	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs827166	0.89[EUR][1000 genomes]
rs827171	0.88[EUR][1000 genomes]
rs827176	0.88[EUR][1000 genomes]
rs827177	0.88[EUR][1000 genomes]
rs827178	0.88[EUR][1000 genomes]
rs827179	0.88[EUR][1000 genomes]
rs827180	0.88[EUR][1000 genomes]
rs827181	0.86[EUR][1000 genomes]
rs827184	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs844119	0.89[EUR][1000 genomes]
rs864332	0.89[EUR][1000 genomes]
rs865454	0.90[EUR][1000 genomes]
rs865455	0.88[EUR][1000 genomes]
rs9784311	0.90[EUR][1000 genomes]
rs9810345	0.92[ASN][1000 genomes]
rs9820370	0.90[EUR][1000 genomes]
rs9823076	0.99[ASN][1000 genomes]
rs9838399	0.86[EUR][1000 genomes]
rs9843089	0.98[ASN][1000 genomes]
rs9847045	0.98[ASN][1000 genomes]
rs9847316	0.95[ASN][1000 genomes]
rs9847460	0.99[ASN][1000 genomes]
rs9850856	0.99[ASN][1000 genomes]
rs9870802	0.99[ASN][1000 genomes]
rs9872889	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1014381	chr3:158070451-158350118	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1000904	chr3:158094357-158159317	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158124600-158146600	Weak transcription	Primary B cells from cord blood	blood

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