Variant report

Variant	rs12642415
Chromosome Location	chr4:85374610-85374611
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1017559	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10516722	0.88[AMR][1000 genomes]
rs11099643	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11725830	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11726182	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642612	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12644117	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12650684	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13121295	0.86[AMR][1000 genomes]
rs13125585	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13142585	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1444953	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1444956	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1444957	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1444975	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1444978	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17008894	0.88[AMR][1000 genomes]
rs1822836	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1867545	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1867546	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1867547	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2028765	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28399961	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61714578	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6836500	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs752399	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs752401	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs752402	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs752403	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs763540	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7654114	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7657410	0.81[EUR][1000 genomes]
rs7658460	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7660161	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684261	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7690203	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7698842	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs977463	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs988422	0.97[AMR][1000 genomes]
rs988423	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85373200-85375200	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr4:85373200-85376800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:85373200-85376800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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