Variant report

Variant	rs7698842
Chromosome Location	chr4:85354274-85354275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10516722	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11099643	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11725830	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11726182	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12642415	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12644117	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12650684	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13121295	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13125585	0.91[AMR][1000 genomes]
rs13142585	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1444953	0.84[AMR][1000 genomes]
rs1444956	0.81[AMR][1000 genomes]
rs1444957	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1444975	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1444978	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17008894	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1867545	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1867546	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1867547	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2028765	0.83[AMR][1000 genomes]
rs28399961	0.82[AMR][1000 genomes]
rs61714578	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6836500	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs752399	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs752401	0.81[AMR][1000 genomes]
rs752402	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs752403	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7654114	0.81[AMR][1000 genomes]
rs7658460	0.84[AMR][1000 genomes]
rs7660161	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7684261	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs977463	0.91[AMR][1000 genomes]
rs988422	0.89[AMR][1000 genomes]
rs988423	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7698842	SLC4A11	trans	cerebellum	SCAN
rs7698842	C4orf22	cis	parietal	SCAN
rs7698842	DMP1	cis	cerebellum	SCAN
rs7698842	SPP1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85353600-85354600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:85353800-85354400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:85354000-85354400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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