Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10516722	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11725830	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11726182	0.87[AMR][1000 genomes]
rs12642415	0.88[AMR][1000 genomes]
rs12644117	0.90[AMR][1000 genomes]
rs12650684	0.87[AMR][1000 genomes]
rs13121295	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13125585	0.87[AMR][1000 genomes]
rs13142585	0.86[AMR][1000 genomes]
rs1373672	0.90[EUR][1000 genomes]
rs1444953	0.82[AMR][1000 genomes]
rs1444957	0.87[AMR][1000 genomes]
rs1444975	0.91[AMR][1000 genomes]
rs1444978	0.91[AMR][1000 genomes]
rs1867546	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1867547	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2028765	0.81[AMR][1000 genomes]
rs4101237	0.89[EUR][1000 genomes]
rs61714578	0.89[AMR][1000 genomes]
rs6836500	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs752399	0.89[AMR][1000 genomes]
rs752402	0.87[AMR][1000 genomes]
rs752403	0.90[AMR][1000 genomes]
rs7658460	0.82[AMR][1000 genomes]
rs7660161	0.89[AMR][1000 genomes]
rs7663470	0.81[EUR][1000 genomes]
rs7673608	0.83[EUR][1000 genomes]
rs7684261	0.86[AMR][1000 genomes]
rs7698842	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs977463	0.87[AMR][1000 genomes]
rs988422	0.85[AMR][1000 genomes]
rs988423	0.87[AMR][1000 genomes]
rs994116	0.87[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17008894	DMP1	cis	cerebellum	SCAN
rs17008894	C4orf22	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85340600-85342600	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search: