Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85331423..85334283-chr4:85334507..85338758,3	MCF-7	breast:
2	chr4:85330262..85331995-chr4:85333808..85336308,3	K562	blood:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10516722	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11725830	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11726182	0.85[AMR][1000 genomes]
rs12642415	0.86[AMR][1000 genomes]
rs12644117	0.88[AMR][1000 genomes]
rs12650684	0.85[AMR][1000 genomes]
rs13125585	0.85[AMR][1000 genomes]
rs13142585	0.84[AMR][1000 genomes]
rs1373672	0.92[EUR][1000 genomes]
rs1444957	0.85[AMR][1000 genomes]
rs1444975	0.89[AMR][1000 genomes]
rs1444978	0.89[AMR][1000 genomes]
rs17008894	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1867546	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1867547	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4101237	0.90[EUR][1000 genomes]
rs61714578	0.87[AMR][1000 genomes]
rs6836500	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs752399	0.87[AMR][1000 genomes]
rs752402	0.85[AMR][1000 genomes]
rs752403	0.88[AMR][1000 genomes]
rs7660161	0.87[AMR][1000 genomes]
rs7663470	0.82[EUR][1000 genomes]
rs7673608	0.85[EUR][1000 genomes]
rs7684261	0.84[AMR][1000 genomes]
rs7698842	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs977463	0.85[AMR][1000 genomes]
rs988422	0.83[AMR][1000 genomes]
rs988423	0.85[AMR][1000 genomes]
rs994116	0.87[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85329400-85334800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:85329600-85338600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:85331200-85332600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:85331400-85332000	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr4:85331400-85332200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:85331400-85332600	Enhancers	Fetal Stomach	stomach
7	chr4:85331800-85332000	Flanking Active TSS	Colon Smooth Muscle	Colon
8	chr4:85331800-85332200	Enhancers	Fetal Lung	lung

Quick Search: