Variant report
| Variant | rs12651152 |
|---|---|
| Chromosome Location | chr4:130042981-130042982 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10518543 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12643279 | 0.92[EUR][1000 genomes] |
| rs12648004 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs13101732 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13111663 | 1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13127992 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs13136209 | 0.80[EUR][1000 genomes] |
| rs13138537 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17014190 | 0.89[ASN][1000 genomes] |
| rs17184802 | 0.84[EUR][1000 genomes] |
| rs2068135 | 0.84[EUR][1000 genomes] |
| rs2068136 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs28643269 | 0.89[ASN][1000 genomes] |
| rs33999735 | 0.87[AMR][1000 genomes] |
| rs34044129 | 0.96[EUR][1000 genomes] |
| rs34483420 | 0.80[EUR][1000 genomes] |
| rs35053690 | 0.84[EUR][1000 genomes] |
| rs35128288 | 1.00[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs35259423 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35349408 | 1.00[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs35388412 | 0.84[EUR][1000 genomes] |
| rs35879843 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs36000518 | 0.80[EUR][1000 genomes] |
| rs36101862 | 1.00[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs36124477 | 0.84[EUR][1000 genomes] |
| rs71612199 | 1.00[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs71613905 | 0.87[AMR][1000 genomes] |
| rs71613908 | 0.84[EUR][1000 genomes] |
| rs71613914 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869258 | chr4:129191619-130138148 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 79 gene(s) | inside rSNPs | diseases |
| 2 | nsv534538 | chr4:129799138-130431688 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv879931 | chr4:129939775-130178102 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:130032400-130052200 | Weak transcription | Aorta | Aorta |
| 2 | chr4:130036000-130044600 | Weak transcription | Pancreas | Pancrea |
