Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10518543	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12643279	0.88[EUR][1000 genomes]
rs12648004	0.81[EUR][1000 genomes]
rs12651152	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13101732	0.88[EUR][1000 genomes]
rs13127992	0.81[EUR][1000 genomes]
rs13138537	0.81[EUR][1000 genomes]
rs17014190	0.89[ASN][1000 genomes]
rs17184802	0.81[EUR][1000 genomes]
rs2068135	0.81[EUR][1000 genomes]
rs2068136	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28643269	0.89[ASN][1000 genomes]
rs34044129	0.92[EUR][1000 genomes]
rs35053690	0.81[EUR][1000 genomes]
rs35259423	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35388412	0.81[EUR][1000 genomes]
rs35879843	0.88[EUR][1000 genomes]
rs36124477	0.81[EUR][1000 genomes]
rs71613908	0.81[EUR][1000 genomes]
rs71613914	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130017600-130040400	Weak transcription	Lung	lung
2	chr4:130029200-130040000	Weak transcription	Esophagus	oesophagus
3	chr4:130029400-130041200	Weak transcription	Spleen	Spleen
4	chr4:130029600-130038600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:130031800-130039800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:130031800-130040000	Weak transcription	Dnd41	blood
7	chr4:130032400-130038200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:130032400-130040000	Weak transcription	Primary T cells from cord blood	blood
9	chr4:130032400-130052200	Weak transcription	Aorta	Aorta
10	chr4:130034800-130038400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:130036000-130044600	Weak transcription	Pancreas	Pancrea
12	chr4:130036600-130038400	Weak transcription	Monocytes-CD14+_RO01746	blood

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