Variant report

Variant	rs12663605
Chromosome Location	chr6:144710528-144710529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs12660406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12660513	0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12660531	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs12660596	1.00[EUR][1000 genomes]
rs12661781	1.00[EUR][1000 genomes]
rs12661969	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs12662267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12662696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12662724	1.00[EUR][1000 genomes]
rs12662786	1.00[EUR][1000 genomes]
rs12662872	1.00[EUR][1000 genomes]
rs12662904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12662914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12663172	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12663380	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12663851	1.00[EUR][1000 genomes]
rs12664200	1.00[EUR][1000 genomes]
rs12664245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12664298	0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs12664304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12664421	0.87[ASN][1000 genomes]
rs12665269	0.85[ASN][1000 genomes]
rs12665589	1.00[EUR][1000 genomes]
rs12665850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17073524	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17073528	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17073529	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17073539	1.00[AFR][1000 genomes]
rs17073544	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17073571	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17073580	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17073598	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17073602	1.00[EUR][1000 genomes]
rs17073610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17073623	1.00[MEX][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17073629	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17073631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17073672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17073678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17840301	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1998367	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34140249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34643516	1.00[AFR][1000 genomes]
rs35325795	1.00[EUR][1000 genomes]
rs36007040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3811097	1.00[EUR][1000 genomes]
rs4301321	1.00[EUR][1000 genomes]
rs4896714	1.00[EUR][1000 genomes]
rs4896715	1.00[EUR][1000 genomes]
rs4896717	1.00[EUR][1000 genomes]
rs55684976	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56820385	1.00[EUR][1000 genomes]
rs57380483	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57485302	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57592921	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57679521	1.00[EUR][1000 genomes]
rs57704478	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58396690	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58590469	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58646546	0.87[AMR][1000 genomes]
rs58847604	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58849686	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58857193	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58981502	1.00[AFR][1000 genomes]
rs59003501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59614628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59718967	1.00[EUR][1000 genomes]
rs59803839	1.00[EUR][1000 genomes]
rs59810504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59892317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59936141	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60053855	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60234245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60345197	1.00[EUR][1000 genomes]
rs60439721	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60484357	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60559108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60661533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60811448	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60857439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60859726	1.00[EUR][1000 genomes]
rs61087655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61211447	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61327932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6914753	1.00[EUR][1000 genomes]
rs6915621	1.00[EUR][1000 genomes]
rs6916795	1.00[GIH][hapmap]
rs6917034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6917261	1.00[EUR][1000 genomes]
rs6922109	1.00[EUR][1000 genomes]
rs6922608	1.00[EUR][1000 genomes]
rs6927798	1.00[EUR][1000 genomes]
rs73589002	1.00[EUR][1000 genomes]
rs73591113	1.00[EUR][1000 genomes]
rs73594934	1.00[EUR][1000 genomes]
rs73594960	0.85[ASN][1000 genomes]
rs73780508	1.00[EUR][1000 genomes]
rs73780540	1.00[EUR][1000 genomes]
rs7741466	1.00[EUR][1000 genomes]
rs7743190	0.88[JPT][hapmap]
rs7745285	1.00[CHB][hapmap];0.80[CHD][hapmap];0.89[ASN][1000 genomes]
rs7745998	1.00[GIH][hapmap]
rs7747486	1.00[EUR][1000 genomes]
rs7751351	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs7751876	1.00[EUR][1000 genomes]
rs7761280	0.88[JPT][hapmap]
rs7766883	1.00[EUR][1000 genomes]
rs7768531	1.00[EUR][1000 genomes]
rs7770411	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7774175	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9321969	1.00[GIH][hapmap]
rs9484874	1.00[EUR][1000 genomes]
rs9496932	1.00[EUR][1000 genomes]
rs9496935	1.00[EUR][1000 genomes]
rs9496938	1.00[EUR][1000 genomes]
rs9496944	1.00[EUR][1000 genomes]
rs9496948	1.00[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.85[ASN][1000 genomes]
rs9496949	0.85[ASN][1000 genomes]
rs9496950	1.00[CHB][hapmap];0.80[CHD][hapmap];0.89[ASN][1000 genomes]
rs9496955	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144690800-144712800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144691600-144713800	Weak transcription	Thymus	Thymus
3	chr6:144697000-144714800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:144697200-144732600	Weak transcription	Gastric	stomach
5	chr6:144700600-144719200	Weak transcription	Ovary	ovary
6	chr6:144700800-144712200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:144700800-144712200	Weak transcription	Right Ventricle	heart
8	chr6:144700800-144716000	Weak transcription	NHLF	lung
9	chr6:144700800-144719000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:144700800-144719000	Weak transcription	Esophagus	oesophagus
11	chr6:144700800-144719000	Weak transcription	Spleen	Spleen
12	chr6:144701200-144711200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:144702800-144711400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:144702800-144713000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:144702800-144720600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:144703200-144713400	Weak transcription	Primary T cells from cord blood	blood
17	chr6:144703200-144719000	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:144703400-144711200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:144703400-144714000	Weak transcription	Fetal Thymus	thymus
20	chr6:144703400-144717600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:144703800-144718600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:144704000-144718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:144704000-144719000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:144705200-144714600	Weak transcription	GM12878-XiMat	blood
25	chr6:144705600-144711200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:144705600-144711400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:144705600-144711800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:144705600-144713400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:144705800-144712200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr6:144705800-144722600	Weak transcription	Psoas Muscle	Psoas
31	chr6:144706200-144712200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr6:144706200-144718200	Weak transcription	Fetal Intestine Small	intestine
33	chr6:144706800-144712200	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr6:144707600-144712200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:144707600-144712200	Weak transcription	Left Ventricle	heart
36	chr6:144707600-144712800	Weak transcription	Lung	lung
37	chr6:144707600-144716000	Weak transcription	Osteobl	bone
38	chr6:144707600-144717800	Weak transcription	Dnd41	blood
39	chr6:144707600-144719000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:144707600-144719000	Weak transcription	Aorta	Aorta
41	chr6:144707600-144719000	Weak transcription	Pancreas	Pancrea
42	chr6:144707800-144711400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:144708400-144715800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:144708400-144716200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:144708800-144713000	Strong transcription	Primary B cells from cord blood	blood
46	chr6:144709000-144711600	Weak transcription	HUVEC	blood vessel
47	chr6:144709000-144716400	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr6:144709000-144716800	Weak transcription	Adipose Nuclei	Adipose
49	chr6:144709000-144719200	Weak transcription	Fetal Kidney	kidney
50	chr6:144709200-144711000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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