Variant report

Variant	rs3811097
Chromosome Location	chr6:144684564-144684565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144683606..144685239-chr6:144688766..144690435,2	K562	blood:

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs12660406	1.00[EUR][1000 genomes]
rs12660513	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12660531	1.00[EUR][1000 genomes]
rs12660596	1.00[EUR][1000 genomes]
rs12661781	1.00[EUR][1000 genomes]
rs12661969	1.00[EUR][1000 genomes]
rs12662267	1.00[EUR][1000 genomes]
rs12662696	1.00[EUR][1000 genomes]
rs12662724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12662786	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12662872	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12662904	1.00[EUR][1000 genomes]
rs12663172	1.00[EUR][1000 genomes]
rs12663380	1.00[EUR][1000 genomes]
rs12663605	1.00[EUR][1000 genomes]
rs12663851	1.00[EUR][1000 genomes]
rs12664200	1.00[EUR][1000 genomes]
rs12664245	1.00[EUR][1000 genomes]
rs12664298	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12664304	1.00[EUR][1000 genomes]
rs12665589	1.00[EUR][1000 genomes]
rs12665850	1.00[EUR][1000 genomes]
rs17073463	1.00[EUR][1000 genomes]
rs17073482	1.00[EUR][1000 genomes]
rs17073498	1.00[EUR][1000 genomes]
rs17073506	1.00[EUR][1000 genomes]
rs17073524	1.00[EUR][1000 genomes]
rs17073528	1.00[EUR][1000 genomes]
rs17073529	1.00[EUR][1000 genomes]
rs17073544	1.00[EUR][1000 genomes]
rs17073571	1.00[EUR][1000 genomes]
rs17073580	1.00[EUR][1000 genomes]
rs17073598	1.00[EUR][1000 genomes]
rs17073602	1.00[EUR][1000 genomes]
rs17073610	1.00[EUR][1000 genomes]
rs17073623	1.00[EUR][1000 genomes]
rs17073629	1.00[EUR][1000 genomes]
rs17073631	1.00[EUR][1000 genomes]
rs17073672	1.00[EUR][1000 genomes]
rs17073678	1.00[EUR][1000 genomes]
rs17840301	1.00[EUR][1000 genomes]
rs1998367	1.00[EUR][1000 genomes]
rs34140249	1.00[EUR][1000 genomes]
rs34502493	1.00[EUR][1000 genomes]
rs35325795	1.00[EUR][1000 genomes]
rs36007040	1.00[EUR][1000 genomes]
rs4301321	1.00[EUR][1000 genomes]
rs4896714	1.00[EUR][1000 genomes]
rs4896715	1.00[EUR][1000 genomes]
rs4896717	1.00[EUR][1000 genomes]
rs55684976	1.00[EUR][1000 genomes]
rs56820385	1.00[EUR][1000 genomes]
rs57069580	1.00[EUR][1000 genomes]
rs57380483	1.00[EUR][1000 genomes]
rs57485302	1.00[EUR][1000 genomes]
rs57592921	1.00[EUR][1000 genomes]
rs57679521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57704478	1.00[EUR][1000 genomes]
rs57712072	1.00[EUR][1000 genomes]
rs57751197	1.00[EUR][1000 genomes]
rs58396690	1.00[EUR][1000 genomes]
rs58476463	0.83[AFR][1000 genomes]
rs58590469	1.00[EUR][1000 genomes]
rs58847604	1.00[EUR][1000 genomes]
rs58849686	1.00[EUR][1000 genomes]
rs58857193	1.00[EUR][1000 genomes]
rs59003501	1.00[EUR][1000 genomes]
rs59612420	1.00[EUR][1000 genomes]
rs59614628	1.00[EUR][1000 genomes]
rs59718967	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59803839	1.00[EUR][1000 genomes]
rs59810504	1.00[EUR][1000 genomes]
rs59936141	1.00[EUR][1000 genomes]
rs60053855	1.00[EUR][1000 genomes]
rs60234245	1.00[EUR][1000 genomes]
rs60345197	1.00[EUR][1000 genomes]
rs60439721	1.00[EUR][1000 genomes]
rs60484357	1.00[EUR][1000 genomes]
rs60559108	1.00[EUR][1000 genomes]
rs60634096	1.00[EUR][1000 genomes]
rs60811448	1.00[EUR][1000 genomes]
rs60857439	1.00[EUR][1000 genomes]
rs60859726	1.00[EUR][1000 genomes]
rs61087655	1.00[EUR][1000 genomes]
rs61211447	1.00[EUR][1000 genomes]
rs61327932	1.00[EUR][1000 genomes]
rs6914753	1.00[EUR][1000 genomes]
rs6915621	1.00[EUR][1000 genomes]
rs6917261	1.00[EUR][1000 genomes]
rs6922109	1.00[EUR][1000 genomes]
rs6922608	1.00[EUR][1000 genomes]
rs6927798	1.00[EUR][1000 genomes]
rs73589002	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73591113	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73594934	1.00[EUR][1000 genomes]
rs73780508	1.00[EUR][1000 genomes]
rs73780540	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7741466	1.00[EUR][1000 genomes]
rs7743190	1.00[CHB][hapmap]
rs7747486	1.00[EUR][1000 genomes]
rs7751351	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs7751876	1.00[EUR][1000 genomes]
rs7761280	1.00[CHB][hapmap]
rs7766883	1.00[EUR][1000 genomes]
rs7768531	1.00[EUR][1000 genomes]
rs7774175	1.00[EUR][1000 genomes]
rs9484874	1.00[EUR][1000 genomes]
rs9496932	1.00[EUR][1000 genomes]
rs9496935	1.00[EUR][1000 genomes]
rs9496938	1.00[EUR][1000 genomes]
rs9496944	1.00[EUR][1000 genomes]
rs9496955	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144653200-144684600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:144663200-144685800	Weak transcription	Brain Substantia Nigra	brain
3	chr6:144665400-144696400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:144670800-144691200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:144671200-144692000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:144671800-144685200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:144673400-144699600	Weak transcription	Fetal Stomach	stomach
8	chr6:144675400-144685600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:144675600-144692000	Weak transcription	Dnd41	blood
10	chr6:144675800-144687000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr6:144676000-144685800	Weak transcription	Thymus	Thymus
12	chr6:144676000-144688200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:144676600-144685200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:144679000-144685400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:144681600-144684600	Genic enhancers	HepG2	liver
16	chr6:144681600-144685600	Enhancers	Adipose Nuclei	Adipose
17	chr6:144681600-144686600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:144681800-144685800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:144681800-144699600	Weak transcription	Esophagus	oesophagus
20	chr6:144682000-144685200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:144682000-144685800	Weak transcription	Placenta	Placenta
22	chr6:144682000-144685800	Weak transcription	Fetal Thymus	thymus
23	chr6:144682000-144691200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr6:144682000-144693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:144682000-144698200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:144682200-144684800	Weak transcription	Primary T cells from cord blood	blood
27	chr6:144682200-144686200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:144682400-144685000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr6:144682400-144686000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:144682400-144686600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:144682600-144685600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:144682600-144685800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:144682600-144696600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:144682800-144685800	Weak transcription	Osteobl	bone
35	chr6:144683200-144685000	Enhancers	Stomach Mucosa	stomach
36	chr6:144683200-144688200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr6:144683400-144684600	Enhancers	Fetal Kidney	kidney
38	chr6:144683400-144685000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:144683400-144685800	Weak transcription	NHDF-Ad	bronchial
40	chr6:144683400-144690400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:144683600-144684600	Weak transcription	Psoas Muscle	Psoas
42	chr6:144683600-144684600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr6:144683600-144684600	Weak transcription	Small Intestine	intestine
44	chr6:144683600-144684800	Weak transcription	Left Ventricle	heart
45	chr6:144683600-144685400	Weak transcription	Spleen	Spleen
46	chr6:144683600-144685800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:144683600-144685800	Weak transcription	Gastric	stomach
48	chr6:144683600-144686000	Weak transcription	Fetal Heart	heart
49	chr6:144683600-144691400	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:144683600-144691400	Weak transcription	Lung	lung

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