Variant report
| Variant | rs12663861 |
|---|---|
| Chromosome Location | chr6:150280816-150280817 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr6:150280814-150280939 | MCF10A-Er-Src | breast: | n/a | chr6:150280891-150280900 chr6:150280890-150280899 chr6:150280892-150280899 chr6:150280891-150280899 |
| 2 | CUX1 | chr6:150280800-150280909 | GM12878 | blood: | n/a | n/a |
| 3 | JUND | chr6:150280729-150281014 | HepG2 | liver: | n/a | chr6:150280889-150280900 chr6:150280891-150280900 chr6:150280890-150280899 chr6:150280892-150280899 chr6:150280891-150280899 |
| 4 | BATF | chr6:150280757-150280957 | GM12878 | blood: | n/a | chr6:150280887-150280898 chr6:150280888-150280898 |
| 5 | BHLHE40 | chr6:150280710-150280916 | GM12878 | blood: | n/a | chr6:150280798-150280807 |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ULBP1 | TF binding region |
| ENSG00000111981 | Chromatin interaction |
| ENSG00000055211 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10499261 | 0.87[ASN][1000 genomes] |
| rs12110592 | 0.81[ASN][1000 genomes] |
| rs12523670 | 0.81[ASN][1000 genomes] |
| rs12527074 | 0.81[ASN][1000 genomes] |
| rs12529569 | 0.81[ASN][1000 genomes] |
| rs12662588 | 0.81[ASN][1000 genomes] |
| rs17079117 | 0.89[ASN][1000 genomes] |
| rs17079127 | 0.89[ASN][1000 genomes] |
| rs17079130 | 0.87[ASN][1000 genomes] |
| rs2018074 | 0.81[ASN][1000 genomes] |
| rs2343264 | 0.81[ASN][1000 genomes] |
| rs3860818 | 0.81[ASN][1000 genomes] |
| rs4084448 | 0.88[ASN][1000 genomes] |
| rs4425606 | 0.85[ASN][1000 genomes] |
| rs61298074 | 0.84[ASN][1000 genomes] |
| rs62441825 | 0.85[ASN][1000 genomes] |
| rs73779721 | 0.81[ASN][1000 genomes] |
| rs7740713 | 0.87[ASN][1000 genomes] |
| rs7744918 | 0.89[ASN][1000 genomes] |
| rs7749024 | 0.81[ASN][1000 genomes] |
| rs7760608 | 0.87[ASN][1000 genomes] |
| rs7763485 | 0.82[ASN][1000 genomes] |
| rs7763772 | 0.81[ASN][1000 genomes] |
| rs7767362 | 0.89[ASN][1000 genomes] |
| rs9791229 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886764 | chr6:150114745-150393683 | Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv517022 | chr6:150145001-150426272 | Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 3 | nsv886765 | chr6:150198491-150288722 | Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 4 | nsv981194 | chr6:150276068-150281801 | Bivalent Enhancer Bivalent/Poised TSS Enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
