Variant report

Variant	rs3860818
Chromosome Location	chr6:150292752-150292753
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150290771..150293444-chr6:150298417..150300274,2	K562	blood:
2	chr6:150287137..150289834-chr6:150291906..150294473,3	K562	blood:

Variant related genes	Relation type
ENSG00000219298	Chromatin interaction
ENSG00000231120	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10499261	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12110592	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12523670	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525053	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12527074	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529569	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530097	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12662588	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663861	0.81[ASN][1000 genomes]
rs1577353	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17079117	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17079127	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17079130	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1977656	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2018074	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181918	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2343264	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4084448	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4354166	0.80[ASN][1000 genomes]
rs4425606	0.87[ASN][1000 genomes]
rs56370653	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56887763	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61158421	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61233579	0.81[ASN][1000 genomes]
rs61298074	0.86[ASN][1000 genomes]
rs61462794	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62441825	0.87[ASN][1000 genomes]
rs62441832	0.96[ASN][1000 genomes]
rs62441834	0.96[ASN][1000 genomes]
rs73779712	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73779717	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73779721	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779728	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73779729	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73779733	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7454183	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7740713	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7744918	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7745903	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7749024	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760608	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7763485	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7763772	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7767362	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9791229	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv970175	chr6:150286661-150300237	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150286800-150294800	Weak transcription	HSMMtube	muscle
2	chr6:150288600-150295600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links