Variant report

Variant	rs4354166
Chromosome Location	chr6:150269102-150269103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10499261	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12110592	0.80[ASN][1000 genomes]
rs12523670	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12524576	0.85[ASN][1000 genomes]
rs12527074	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12529569	0.80[ASN][1000 genomes]
rs12662588	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12664934	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17079064	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17079068	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17079076	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17079081	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17079083	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17079087	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17079117	0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17079127	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17079130	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2018074	0.80[ASN][1000 genomes]
rs2343264	0.80[ASN][1000 genomes]
rs3860818	0.80[ASN][1000 genomes]
rs4084448	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4133317	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4242282	0.83[ASN][1000 genomes]
rs4242283	0.83[ASN][1000 genomes]
rs4273697	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4283897	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4425606	0.83[ASN][1000 genomes]
rs4473866	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4504486	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4591860	0.85[ASN][1000 genomes]
rs57923090	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59712181	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60324886	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61233579	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61298074	0.82[ASN][1000 genomes]
rs62441825	0.83[ASN][1000 genomes]
rs6557194	0.88[ASN][1000 genomes]
rs6557200	0.82[ASN][1000 genomes]
rs6557201	0.83[ASN][1000 genomes]
rs6940581	0.83[ASN][1000 genomes]
rs73779721	0.80[ASN][1000 genomes]
rs7740713	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7744918	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7749024	0.80[ASN][1000 genomes]
rs7760608	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7763772	0.80[ASN][1000 genomes]
rs7764321	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7767362	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9791229	0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3332714	chr6:150259037-150275045	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv969456	chr6:150263659-150269861	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150263800-150269600	Weak transcription	HSMMtube	muscle
2	chr6:150263800-150271000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:150263800-150271600	Weak transcription	NHEK	skin
4	chr6:150264000-150269200	Weak transcription	Osteobl	bone
5	chr6:150264000-150270800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:150264000-150271800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:150264000-150272000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:150264000-150274600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:150264200-150271400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:150264200-150271800	Weak transcription	HSMM	muscle
11	chr6:150264400-150274800	Weak transcription	HMEC	breast
12	chr6:150264800-150269200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:150267600-150269800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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