Variant report

Variant	rs12664934
Chromosome Location	chr6:150267319-150267320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17079064	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17079068	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17079076	0.86[AMR][1000 genomes]
rs17079081	0.83[AMR][1000 genomes]
rs17079083	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17079087	0.80[AMR][1000 genomes]
rs17079117	0.80[AMR][1000 genomes]
rs4084448	0.83[AFR][1000 genomes]
rs4133317	0.81[AMR][1000 genomes]
rs4354166	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4504486	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57923090	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs59712181	0.95[AFR][1000 genomes]
rs60324886	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61233579	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7764321	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9791229	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3332714	chr6:150259037-150275045	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv969456	chr6:150263659-150269861	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150263600-150267800	Weak transcription	Lung	lung
2	chr6:150263800-150269600	Weak transcription	HSMMtube	muscle
3	chr6:150263800-150271000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:150263800-150271600	Weak transcription	NHEK	skin
5	chr6:150264000-150269200	Weak transcription	Osteobl	bone
6	chr6:150264000-150270800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:150264000-150271800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:150264000-150272000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:150264000-150274600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:150264200-150271400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:150264200-150271800	Weak transcription	HSMM	muscle
12	chr6:150264400-150274800	Weak transcription	HMEC	breast
13	chr6:150264800-150269200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:150265000-150267600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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