Variant report

Variant	rs17079117
Chromosome Location	chr6:150280970-150280971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr6:150280729-150281014	HepG2	liver:	n/a	chr6:150280889-150280900 chr6:150280891-150280900 chr6:150280890-150280899 chr6:150280892-150280899 chr6:150280891-150280899

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149887361..149889007-chr6:150280214..150281779,2	K562	blood:
2	chr6:150280454..150282016-chr6:150284184..150286237,2	K562	blood:

Variant related genes	Relation type
ULBP1	TF binding region
ENSG00000055211	Chromatin interaction
ENSG00000111981	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10499261	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12110592	0.91[ASN][1000 genomes]
rs12523670	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12525053	0.84[ASN][1000 genomes]
rs12527074	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12529569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs12530097	0.87[ASN][1000 genomes]
rs12662588	0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12663861	0.89[ASN][1000 genomes]
rs12664934	0.80[AMR][1000 genomes]
rs1535955	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1577353	0.89[ASN][1000 genomes]
rs17079064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17079068	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17079076	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17079081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17079083	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17079087	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17079127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1977656	0.84[ASN][1000 genomes]
rs2018074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2181918	0.87[ASN][1000 genomes]
rs2343264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs3860818	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4084448	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4133317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4354166	0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4425606	0.95[CHB][hapmap];0.94[ASN][1000 genomes]
rs4504486	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs56370653	0.89[ASN][1000 genomes]
rs56887763	0.81[EUR][1000 genomes]
rs57923090	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59712181	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs60324886	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61158421	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61233579	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61298074	0.93[ASN][1000 genomes]
rs61462794	0.81[EUR][1000 genomes]
rs62441825	0.94[ASN][1000 genomes]
rs62441832	0.87[ASN][1000 genomes]
rs62441834	0.87[ASN][1000 genomes]
rs6557194	0.80[ASN][1000 genomes]
rs73779712	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73779717	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73779721	0.91[ASN][1000 genomes]
rs73779728	0.87[ASN][1000 genomes]
rs73779729	0.87[ASN][1000 genomes]
rs73779733	0.87[ASN][1000 genomes]
rs7454183	0.90[ASN][1000 genomes]
rs7740713	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7744918	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7749024	0.91[ASN][1000 genomes]
rs7760608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7763485	0.90[ASN][1000 genomes]
rs7763772	0.91[ASN][1000 genomes]
rs7764321	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7767362	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv981194	chr6:150276068-150281801	Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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