Variant report

Variant	rs1535955
Chromosome Location	chr6:150284216-150284217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10499261	0.91[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs12110592	0.86[ASN][1000 genomes]
rs12523670	0.86[ASN][1000 genomes]
rs12527074	0.86[ASN][1000 genomes]
rs12529569	0.91[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.86[ASN][1000 genomes]
rs12530097	0.83[ASN][1000 genomes]
rs12662588	0.86[ASN][1000 genomes]
rs12663861	0.84[ASN][1000 genomes]
rs1577353	0.87[ASN][1000 genomes]
rs17079064	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs17079076	0.91[CHB][hapmap];0.80[JPT][hapmap]
rs17079081	0.90[CHB][hapmap]
rs17079083	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs17079087	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs17079117	0.91[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs17079127	0.91[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs17079130	0.91[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs2018074	0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2181918	0.83[ASN][1000 genomes]
rs2343264	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs3860818	0.86[ASN][1000 genomes]
rs4084448	0.93[ASN][1000 genomes]
rs4133317	0.91[CHB][hapmap];0.88[CHD][hapmap];0.80[JPT][hapmap]
rs4354166	0.83[ASN][1000 genomes]
rs4425606	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4504486	0.91[CHB][hapmap];0.86[CHD][hapmap];0.80[JPT][hapmap]
rs56370653	0.87[ASN][1000 genomes]
rs61158421	0.87[ASN][1000 genomes]
rs61233579	0.83[ASN][1000 genomes]
rs61298074	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62441825	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62441832	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62441834	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73779712	0.86[ASN][1000 genomes]
rs73779717	0.85[ASN][1000 genomes]
rs73779721	0.86[ASN][1000 genomes]
rs73779728	0.85[ASN][1000 genomes]
rs73779729	0.85[ASN][1000 genomes]
rs73779733	0.85[ASN][1000 genomes]
rs7454183	0.85[ASN][1000 genomes]
rs7740713	0.96[ASN][1000 genomes]
rs7744918	0.91[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs7745903	0.95[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs7749024	0.86[ASN][1000 genomes]
rs7760608	0.91[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs7763485	0.85[ASN][1000 genomes]
rs7763772	0.86[ASN][1000 genomes]
rs7767362	0.93[ASN][1000 genomes]
rs9688944	1.00[CEU][hapmap]
rs9791229	0.90[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150283800-150284400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
2	chr6:150283800-150284600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:150284000-150284400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr6:150284000-150284400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:150284000-150284400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr6:150284000-150284400	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
7	chr6:150284000-150284400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr6:150284000-150284400	Bivalent Enhancer	Placenta	Placenta
9	chr6:150284000-150284400	Enhancers	Gastric	stomach
10	chr6:150284000-150284400	Enhancers	HMEC	breast
11	chr6:150284000-150284400	Enhancers	HSMMtube	muscle
12	chr6:150284000-150284400	Bivalent Enhancer	NHDF-Ad	bronchial
13	chr6:150284000-150284400	Bivalent Enhancer	NHLF	lung
14	chr6:150284000-150284400	Bivalent Enhancer	Osteobl	bone
15	chr6:150284000-150284600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
16	chr6:150284000-150284600	Enhancers	Esophagus	oesophagus
17	chr6:150284000-150284800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:150284000-150285200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:150284000-150286600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr6:150284200-150284400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
21	chr6:150284200-150284400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr6:150284200-150284400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:150284200-150284400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:150284200-150284400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:150284200-150284400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
26	chr6:150284200-150284400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
27	chr6:150284200-150284400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
28	chr6:150284200-150284400	Bivalent Enhancer	Primary B cells from cord blood	blood
29	chr6:150284200-150284400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
30	chr6:150284200-150284400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
31	chr6:150284200-150284400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:150284200-150284400	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:150284200-150284400	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:150284200-150284400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:150284200-150284400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
36	chr6:150284200-150284400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:150284200-150284400	Bivalent Enhancer	Brain Anterior Caudate	brain
38	chr6:150284200-150284400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
39	chr6:150284200-150284400	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:150284200-150284400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
41	chr6:150284200-150284400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
42	chr6:150284200-150284400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
43	chr6:150284200-150284400	Bivalent Enhancer	Fetal Muscle Leg	muscle
44	chr6:150284200-150284400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
45	chr6:150284200-150284400	Enhancers	Right Ventricle	heart
46	chr6:150284200-150284400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
47	chr6:150284200-150284400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
48	chr6:150284200-150284400	Bivalent Enhancer	GM12878-XiMat	blood
49	chr6:150284200-150284400	Flanking Active TSS	Hela-S3	cervix
50	chr6:150284200-150284400	Bivalent Enhancer	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links