Variant report

Variant	rs62441834
Chromosome Location	chr6:150296363-150296364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150295506..150297191-chr6:150310699..150313123,2	K562	blood:
2	chr6:150294863..150297113-chr6:150298287..150300861,2	K562	blood:

Variant related genes	Relation type
ENSG00000231120	Chromatin interaction
ENSG00000219298	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10499261	0.87[ASN][1000 genomes]
rs12110592	0.96[ASN][1000 genomes]
rs12110668	0.80[AFR][1000 genomes]
rs12523670	0.96[ASN][1000 genomes]
rs12525053	0.89[ASN][1000 genomes]
rs12527074	0.96[ASN][1000 genomes]
rs12529569	0.96[ASN][1000 genomes]
rs12530097	0.93[ASN][1000 genomes]
rs12662588	0.96[ASN][1000 genomes]
rs1577353	0.98[ASN][1000 genomes]
rs17079117	0.87[ASN][1000 genomes]
rs17079127	0.87[ASN][1000 genomes]
rs17079130	0.87[ASN][1000 genomes]
rs1977656	0.89[ASN][1000 genomes]
rs2018074	0.96[ASN][1000 genomes]
rs2181918	0.93[ASN][1000 genomes]
rs2343264	0.96[ASN][1000 genomes]
rs3860818	0.96[ASN][1000 genomes]
rs4084448	0.87[ASN][1000 genomes]
rs4425606	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56370653	0.98[ASN][1000 genomes]
rs56887763	0.84[ASN][1000 genomes]
rs61158421	0.95[ASN][1000 genomes]
rs61298074	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61462794	0.83[ASN][1000 genomes]
rs62441825	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62441832	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73779712	0.93[ASN][1000 genomes]
rs73779717	0.95[ASN][1000 genomes]
rs73779721	0.96[ASN][1000 genomes]
rs73779728	0.97[ASN][1000 genomes]
rs73779729	0.97[ASN][1000 genomes]
rs73779733	0.97[ASN][1000 genomes]
rs7454183	0.95[ASN][1000 genomes]
rs7740713	0.87[ASN][1000 genomes]
rs7744918	0.87[ASN][1000 genomes]
rs7749024	0.96[ASN][1000 genomes]
rs7760608	0.87[ASN][1000 genomes]
rs7763485	0.95[ASN][1000 genomes]
rs7763772	0.95[ASN][1000 genomes]
rs7767362	0.87[ASN][1000 genomes]
rs9791229	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv970175	chr6:150286661-150300237	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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