Variant report

Variant	rs61462794
Chromosome Location	chr6:150291654-150291655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150290771..150293444-chr6:150298417..150300274,2	K562	blood:
2	chr6:150288130..150291946-chr6:150324543..150327440,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000219298	Chromatin interaction
ENSG00000231120	Chromatin interaction
ENSG00000218358	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10499261	0.81[EUR][1000 genomes]
rs12110592	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12523670	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12525053	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12527074	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12529569	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12530097	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12662588	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1577353	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17079117	0.81[EUR][1000 genomes]
rs17079127	0.81[EUR][1000 genomes]
rs17079130	0.81[EUR][1000 genomes]
rs1977656	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2018074	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2181918	0.86[ASN][1000 genomes]
rs2343264	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3860818	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4084448	0.81[EUR][1000 genomes]
rs56370653	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56887763	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61158421	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62441832	0.83[ASN][1000 genomes]
rs62441834	0.83[ASN][1000 genomes]
rs73779712	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73779717	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73779721	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73779728	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73779729	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73779733	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7454183	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7740713	0.81[EUR][1000 genomes]
rs7744918	0.81[EUR][1000 genomes]
rs7745903	0.80[EUR][1000 genomes]
rs7749024	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7760608	0.81[EUR][1000 genomes]
rs7763485	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7763772	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7767362	0.81[EUR][1000 genomes]
rs9791229	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv970175	chr6:150286661-150300237	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150286800-150294800	Weak transcription	HSMMtube	muscle
2	chr6:150288600-150295600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:150291600-150292200	Weak transcription	Spleen	Spleen

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