Variant report

Variant	rs7745903
Chromosome Location	chr6:150283533-150283534
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr6:150283455-150285912	K562	blood:	n/a	chr6:150284356-150284366 chr6:150284350-150284362 chr6:150284356-150284366 chr6:150284358-150284369 chr6:150284356-150284366 chr6:150284356-150284366 chr6:150284357-150284365

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150276072..150278660-chr6:150282863..150284944,2	K562	blood:
2	chr6:150281848..150284809-chr6:150294278..150296186,2	MCF-7	breast:

Variant related genes	Relation type
ULBP1	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10499261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12110592	0.81[ASN][1000 genomes]
rs12523670	0.81[ASN][1000 genomes]
rs12527074	0.81[ASN][1000 genomes]
rs12529569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12662588	0.81[ASN][1000 genomes]
rs1535955	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs17079064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs17079076	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17079081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17079083	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs17079087	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs17079117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17079127	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17079130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2018074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2343264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3860818	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4084448	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4133317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs4425606	1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4504486	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs56887763	0.80[EUR][1000 genomes]
rs61158421	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61233579	0.80[AMR][1000 genomes]
rs61298074	0.83[ASN][1000 genomes]
rs61462794	0.80[EUR][1000 genomes]
rs62441825	0.84[ASN][1000 genomes]
rs73779712	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73779717	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73779721	0.81[ASN][1000 genomes]
rs7454183	0.82[ASN][1000 genomes]
rs7740713	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7744918	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7749024	0.81[ASN][1000 genomes]
rs7760608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7763772	0.81[ASN][1000 genomes]
rs7767362	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9791229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150283400-150283800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin

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